Etheostoma cragini (Arkansas darter): 117941888
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Entry
117941888 CDS
T07493
Symbol
dscamb
Name
(RefSeq) Down syndrome cell adhesion molecule homolog isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117941888 (dscamb)
Cell adhesion molecules [BR:
ecra04515
]
Immunoglobulin superfamily
DSCAM family
117941888 (dscamb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Ig_5
Pur_ac_phosph_N
C1-set
V-set_CD47
Sp38
fn3_2
C2-set_3
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
117941888
NCBI-ProteinID:
XP_034722978
LinkDB
All DBs
Position
3:19128214..19245306
Genome browser
AA seq
2093 aa
AA seq
DB search
MWILAFIFFQSILNVFSEDLHSSLYFVNASLQEVVFASTTGTSVPCPAGGAPPASLRWYL
ATGEEIYDVPGIRHVHPNGTLQIFNFLPSSFSKLIHDNTYYCTAENPSGKIRSQDVHIKA
VSREPYTVRVADQKAMRGSVAVFKCIIPASVEAYVTVVSWEKDTVSLNSGQRYLITSTGA
LYILDVLPEDGLNNYRCTTRHRYTGETRQSNSARLIVSDPTNAEPGILDGFDHREVMINH
RVELPCKASGYPTPKYRWLKDNSPLEPDSRFRQTITGLLIESTQPSDSGTYVCEVWNSYG
NTEVMGRLYVKQPLKAVVSPRKVKGSVGSKVSLSCSVSGSDEYELSWYRNGEIIYPGNNV
RFTGLNRENLIMEGMSKSDGGAYQCFARKGKMSAQDFVQVILEDGTPKILSSFSEKVVNP
NEPVFLVCNVKGTPPPRCSWSLDEDPVIKDSHHHLGHYETHEGHVVSQLNVTHTQVQDGG
VYRCTCSNSAGVVYHQARINVRGRASIRPMKNITAIAGRDAFVHCRVIGYPYYSIKWYKN
SALLPFNHRQRAFENNGTLKLTNVQQVDAGEYNCKVMVQPNKMDSQSVHVLVRVPPYIQP
FEFQRFTIGQRVFIPCVVMSGDRPLDITWQKDGRPIPISLGVTVDNIDFTSSLRISNLTP
DHNGNYTCIARNEAAAVEHQSQLIVRVPPQFVVQPEDQDGIYGKTVTLNCSAEGYPPPTI
VWEHSKGAGVPQFQPIALNSGSRVQLLSNGSLLIKHVLEDDSGFYLCKVSNDVGADVSKS
MYLTVKIPAMITSYPNTTLATQGEEKKMSCIAHGEKPIMVRWEKEERIINPETSRYVVTV
KEVADEVVSTLVIMPTVREDSGFFSCHAINSFGEDRGIIQLTVQEPPDPPEVEIREVKDR
TIALRWTMGFDGNSPITGYDIECKNKSASWLSAQVTKDVSPQLNQATIIDLHPSSTYNIR
MVAKNIIGNSNPSNELTITTDEAAPDGPPQDVTLESTSPQSIKVSWKPPYKYLQNGVIRG
YQVGYREYSPGGSHQFTIISLDTTGDTTESIVLDNLKKFTQYSVVVQAANRAGTGPSSQQ
VVTKTLEDVPSRAPESVLAVAKSPEVISLSWMPLPREALNGNLQGYRVIYWANLPDGELG
EIRNVTTNQPSLELDGLEKYTNYSIQVLAFTNAGDGVRSEQIYVRTKEDVPGPPAGVKAA
ASSSSVVFVSWLPPLKLNGIIRKYIVFCSNLHPMVMSEFEASPDAYFYRIPNLARNRQYS
IWVVAVTAAGHGNNSEKITVEPLAKAPARILTFNGTVTTPWMKDIVLPCKAVGDPPPTIK
WLKGNTNGTPTPVLVDGRRSVYGNGSFIIRTVKAEDSGNYSCVASNNWGSDEITLNLQVQ
VPPDQPRLTVTKTTTTSITLSWIPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYR
LENLKCGTWYKFTLTAQNAVGPGRISEIIEAKTHGKEPQFAKDHELFTSINSTRARLNLV
GWNNGGCPITSFILEYRAVDSATWTTAQRTSLTKSYILYDLQEATWYELQMKVTNSAGSA
EKRITFATLNADGSTIPPLLKTGDPISDNMSGSGGLKMVVTITSVLVVAVLVFIMLMVLK
RRRREQRLKRLRDAKSLAEMLMSKNTRTPDTVNKQQQTLRMHIDIPRAQLLIEERDTMET
IDDRSTVLLTDNDFGETNKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTSESHHHPTA
RRTAKAGPAAARSRYASQWTLNRPHPTSSSHTLTTDWRLPTPRATGSVDKESDSYSVSPS
QDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTAGT
NDYTDSLTSSTPSESGICRFTASPPKPQDVSRVMTMAVPKAHRPAGELVHLPPYLRMDFL
LNRGVPLAARGGGVSSSSGSSSSGGGGGGGGGGGGGGGAGAGAGSGASGVGAGSAGEARG
MGGGGGGAMGQTCLEPQRSRTLKRPPPMEPTPMEVPSPREVQQWQPGTASTLPHRDVRER
GEARGEVRAEVPSSGDLAQAQAAKLSTSQESLLDSRGHLKQSNNPYAKSYTLV
NT seq
6282 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattggcttttatctttttccagagcatcttgaatgttttcagtgaggaccta
cattccagcttatactttgtcaatgcatctttgcaagaggtagtatttgccagcaccaca
gggacctctgtgccctgtcctgctggtggcgcacctcctgcctcgttgcgctggtatctg
gcgaccggcgaggagatctacgatgtcccgggcatccggcacgtccaccccaatggaacc
ctccagatcttcaacttcctgccgtccagcttcagcaagctgatccacgataacacgtac
tactgcactgccgagaacccctctggcaagatcaggagtcaggatgtccacatcaaagct
gtttcacgggaaccctacacagtccgagtagccgaccagaaggctatgagaggcagtgtt
gccgtcttcaagtgcattatccctgcttctgttgaggcctacgtcactgttgtatcatgg
gagaaagacacagtttcactcaactcaggacaaagatatctcatcacatccacaggagcc
ttgtatattctggacgtcctgcctgaggatgggttgaataactatcgctgcaccacccgc
caccgctacaccggtgagactcgtcagagcaacagcgcgcgtctcattgtgtcagacccc
accaatgctgagccaggcatcttggatggctttgaccaccgagaggtgatgattaatcat
cgggtggagctgccctgtaaggcttcaggctacccaacgcccaaataccgctggctgaag
gacaacagccctttggagcctgacagtcgcttccgccagaccatcacagggctgctgata
gaaagcacacagcccagtgactctgggacatacgtgtgtgaagtgtggaacagttatggc
aacactgaggtcatggggcgtctttatgtcaaacagcccttgaaggcagtggtgagccct
cggaaggtgaaaggcagtgtgggtagcaaggtgtctctgtcttgtagcgtgagcggctca
gacgagtatgagctttcatggtaccgcaacggagagatcatctaccctggtaacaatgtc
cgttttaccggactcaaccgggagaaccttataatggagggaatgtcgaagagtgacggt
ggagcctaccagtgcttcgccaggaagggcaaaatgtctgcacaggactttgtgcaagtc
atccttgaagatggcactccaaagatcctgtcctcttttagtgagaaggtggtgaaccca
aacgagcccgttttcctggtctgcaatgtcaagggcactccacctcccaggtgcagctgg
tcactggacgaagaccccgtcatcaaagacagccaccaccacctgggccactacgaaacc
cacgagggccacgtcgtcagccagctcaacgtcacacacacccaggtgcaggacggaggg
gtttaccggtgcacgtgcagcaactcggccggggttgtgtaccaccaggctcgaataaac
gtaagaggccgcgccagcattcgtccaatgaaaaacatcacagcgattgctggacgagac
gcgtttgttcactgccgtgtgattggctatccttactactccataaagtggtacaaaaac
tcggccctgctaccgtttaaccaccgacagcgagcttttgagaacaacggcacactgaag
ctgaccaatgtgcagcaggtggatgctggcgagtataactgcaaggtgatggtccaaccc
aacaagatggactcccagagtgtccatgttcttgtgagagtccctccctacattcaaccc
tttgagttccagcgcttcaccatcggccagcgtgtcttcattccctgcgtggtcatgtca
ggcgaccgccctctagacatcacatggcaaaaagatggacggccaatccccatcagcctg
ggtgtgactgtggacaacatcgacttcaccagctcactgcgaatctccaacctgacgccc
gaccacaacggcaactacacctgtattgcccgcaacgaggctgctgcagtggagcaccag
agtcagctcattgttcgagttcctcctcagtttgtggttcagcctgaggatcaagatggg
atctacgggaaaactgtgactctgaactgctcagctgaaggctacccaccacccaccatc
gtatgggaacactccaaaggtgcgggcgtcccccagtttcagcctatcgcactgaacagc
ggctctcgagtgcagctgctgagcaacggttcgctgctaatcaaacacgtgctggaggac
gacagcggcttctacctgtgtaaggtcagcaacgacgtgggagctgatgtcagcaagtcc
atgtacctcactgtcaaaatcccagccatgatcacctcttaccccaacaccactctggct
acacagggcgaggagaagaagatgagctgcattgctcacggggagaaacccataatggtg
cgctgggagaaagaagaacgtatcatcaacccggagaccagccgatatgtggtcaccgtc
aaagaggtggctgatgaagtcgtctctacgctggtgattatgccaaccgttcgtgaggac
tctggtttcttctcctgtcatgccatcaactccttcggtgaggatcgaggcatcatacag
ctcacagtgcaagaaccacccgaccctccagaggtggagatccgggaggttaaagatcgt
accatagctctccgctggaccatgggctttgatggcaacagccccatcacgggatatgat
attgagtgcaaaaacaaatcagcgtcatggctatcagcccaggtaaccaaagatgtttca
ccgcagctcaaccaggcaacgattattgacctccacccttcctccacttacaacatccgc
atggtcgccaagaacatcattggcaacagcaaccctagcaacgagctcaccatcactact
gatgaagcagctcctgacgggccaccacaggatgtcactctggagtcaacctccccacaa
agcatcaaagtttcctggaagcctccctacaagtacctgcagaatggtgtgatccgtggc
taccaggtgggctacagagagtatagccctggtgggagccaccagttcaccatcatcagc
ctggacacaacaggggacaccacagagagcatcgtgctggacaacctgaagaagttcact
cagtacagcgtggtggtgcaggctgcaaatagggcaggcaccgggccatcctcacagcaa
gtcgtcaccaaaacactagaggatgtgccatctcgagctcctgaaagtgtcctggccgta
gcaaagtccccagaagtcatctcgctctcatggatgcctctgcccagagaggctctcaat
ggaaacctgcagggatacagagtcatctactgggcaaacctgcctgacggagaactggga
gaaatcaggaatgtgacgaccaatcagccgtctctggagctggacggtttggagaagtac
acaaactacagcatccaggtcttagcctttaccaacgctggagatggtgtccgcagtgag
cagatctacgtccgcactaaggaggatgttcctggtcccccagcgggggttaaggctgca
gcctccagtagctctgtggtgtttgtctcctggctgcctccactcaaactcaatggcatc
atcaggaaatacatcgtcttctgctctaacctgcatccgatggtgatgagcgagtttgag
gcgtctccagatgcctatttctacaggatccccaatctggctcgaaacagacagtacagt
atctgggtggtggctgtgacggctgctggtcatggcaacaacagtgagaagattacagtg
gagcctctagccaaagctcccgccaggattctgaccttcaatgggacagtgaccactcct
tggatgaaggacattgttttgccatgcaaggctgttggagaccctcctcctaccatcaag
tggctcaaggggaacacaaacggaactcctacacctgtccttgtggatggtcgtcgtagt
gtctatggcaacggcagcttcatcatccgcacagtgaaagcagaggattccgggaactac
agctgtgtggccagcaacaactggggctcagatgagatcacacttaacctgcaggtccaa
gtccctcctgaccagccacgcctcacagttaccaagactaccaccacatcaatcacattg
tcatggatacctggagataacggagggagctcaatcagaggttacatactgcagtactca
gaggacaacagtgagcagtggggcagtttccccatcagccccagtgagcgttcataccgt
ttagagaacctgaagtgcggcacttggtataaatttacgctgacagcccagaatgcagtg
gggccagggcgcatcagtgagataattgaagctaagacccatgggaaagaaccacagttt
gccaaagaccatgaactcttcaccagcattaactccaccagagccaggctcaacctggtt
ggctggaacaacggaggctgtccaatcacctccttcatactggagtaccgagcagtggac
tcggccacctggaccactgcccagcgcacatcgctgaccaagagctacatcctgtacgac
ttgcaggaggcaacctggtacgaactgcagatgaaggtcaccaacagcgctggctcagca
gaaaagagaatcacctttgctactctcaatgctgacggaagtaccatccctcccttgctg
aaaacaggagatccaatctcagacaacatgtcaggcagcgggggtctgaagatggtggtt
accatcacctctgttctcgtggtagctgtactggtctttatcatgctcatggtgctaaag
aggagacggagggagcagaggctcaagagactcagagatgccaaaagcctggcagaaatg
ctgatgagtaagaacacacggactcccgacacagtgaacaagcagcagcagacattaaga
atgcacatcgacattcccagagcccagctcctcattgaggagagggacaccatggagaca
atcgatgacaggtccaccgtgctgttgacagacaatgactttggagagacaaataagcag
aaatcctccacagtgacccacacagtccactaccagtctctgtcccaggccactggacca
ctggtggacgtgtccgatgccaggcctggaaccagtgagtcccaccaccatcccactgcc
agacgcactgccaaagctggtcctgccgcggcacgcagccgctacgccagccagtggacc
ctgaaccggcctcacccaaccagctcctcacacaccctgaccaccgactggagactccct
acgccacgtgccactggatctgtggacaaggagagcgacagttacagtgtcagcccctct
caggatacagatcgtgcacgaagcagcatggtatcaacagagagtgcgtcctccacctat
gaggagctggccagagcctacgagcatgccaagatggaagagcagctccggcacgccaag
ttcaccatcaccgagtgcttcatctctgacacctcatccgaacagatgacagcagggacc
aacgactacactgacagcctgacctccagcacgccgtctgagtcaggcatctgccgcttt
accgcttcgccgcctaaacctcaggatgtcagtcgggtcatgaccatggccgtgcccaag
gcacacagacctgcaggagagctggtccacttgccgccatacctccgtatggacttcctg
ttgaaccgtggcgtgccactggcagcccgaggtggaggggtcagcagcagcagtggcagc
agcagcagtggtggtggaggaggaggaggaggaggaggaggaggtggaggaggagcagga
gcaggagcaggatcaggagcaagtggagttggtgctggttctgccggggaggcaagagga
atgggaggaggtggaggaggagccatgggccagacctgcctagaaccccagaggagccgt
accttgaagaggccacctcccatggagcccacccccatggaagtgccatcacccagggag
gtgcagcagtggcagccaggaactgcctccaccctcccccacagggatgttcgggagagg
ggagaggcccggggtgaggtccgggcagaggtcccctcctcgggagacctagcccaagca
caggctgccaagctcagcacttcccaggagtcactgctggattccagaggacacctgaaa
cagagcaacaacccctatgccaagtcttacactctggtataa
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