Etheostoma cragini (Arkansas darter): 117941992
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Entry
117941992 CDS
T07493
Symbol
hmgb1b
Name
(RefSeq) high mobility group protein B1b
KO
K10802
high mobility group protein B1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03410
Base excision repair
ecra04140
Autophagy - animal
ecra04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
117941992 (hmgb1b)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117941992 (hmgb1b)
09143 Cell growth and death
04217 Necroptosis
117941992 (hmgb1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117941992 (hmgb1b)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117941992 (hmgb1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117941992 (hmgb1b)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
117941992 (hmgb1b)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
117941992 (hmgb1b)
MMR (mismatch excision repair)
Other MMR factors
117941992 (hmgb1b)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117941992 (hmgb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
117941992
NCBI-ProteinID:
XP_034723164
LinkDB
All DBs
Position
3:5277981..5280830
Genome browser
AA seq
195 aa
AA seq
DB search
MGKDLRKPKGKMSSYAYFVQTCREEHKKKHPEASVNFAEFSKKCSERWKTMSQKERGNFE
DMAKQDKVRYEREMKNYDPPKGQKRKRFKDPNAPKRPPSAFFIFCADFRPKVKSEHPGLT
IGDTAKKLGEMWNSSSAENKQPYERKAAKLKEKYDKDIIAYRTKGTVETASAAAADDDDD
DDDEEDDDDEDDDDE
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatctgaggaagccgaaaggcaaaatgtcctcatatgcctactttgtgcaa
acatgcagagaggagcataagaagaaacatcctgaagcatctgtcaactttgcagagttc
tccaagaaatgctctgagcgatggaagacaatgtcacagaaagaaagaggcaattttgaa
gatatggccaaacaagacaaggtgcgttatgaaagggaaatgaagaattacgaccccccc
aagggccagaagaggaagcgattcaaggaccccaatgcccccaagaggccaccgtctgca
ttcttcatattctgtgcagactttcgccccaaggtaaaaagtgagcatcctggactcacc
attggggacactgcaaagaagttgggagagatgtggaacagctcatcagcagagaacaag
cagccgtatgagaggaaggctgccaagttgaaggagaaatacgacaaggatatcattgct
taccgtacaaagggcacagtggaaacagcatctgctgccgcagcagacgacgatgatgac
gacgacgatgaagaggacgatgacgatgaggacgacgacgatgaatag
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