Etheostoma cragini (Arkansas darter): 117942065
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Entry
117942065 CDS
T07493
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117942065 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117942065 (scarf1)
Membrane trafficking [BR:
ecra04131
]
Endocytosis
Phagocytosis
Scavenger receptors
117942065 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
Motif
Other DBs
NCBI-GeneID:
117942065
NCBI-ProteinID:
XP_034723261
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All DBs
Position
3:14430322..14438474
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AA seq
915 aa
AA seq
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MELLLRALSALLCFSLSSQNLDPDGRNVCHNIRDPSTLVCCTGWRQEGKECTIPVCEGEQ
ACQKDEICVYPGVCRCPAGYYGAHCKTRCPSEFWAPDCRQVCQCYPHGHCHPVTGECTCN
SNRWGPLCQYTCKCARHGHCHPVHGNCTCDEGWWMSTCSKPCQCFIGGSVGPGCDQLTGR
CQCNRGHWGMKCPISCNCFLSPCNERTGVCECESGWWGPSCDRRCNCDLTHSSCDQANGQ
CLCHAGYQGLFCSQPCEAGKYGSGCKMSCGYCKDNQLCSATDGACDACESGWNGTRCDHP
CPAGSYGDGCQEKCPRCRNNEPCDPITGTCWRCDPGWTGPRCEEACSNRTFGDACSFLCS
PCFHGNCHHVTGRCVCQPGFQGESCNSTCPNLQFGLNCSSICDCGEVGCDPVTGVCPNSG
RAAVLAGVLVPLLLLLLAVLCCCLCCGGGPVDGKDRATVAEGGWSVRMKYHVYSVLANIG
AALPCISDWSSGLPRVTVSHHDPELTFNHSFIEPPSCGWVTEGSSFDTDEEEGEALYCVP
PREDIPSVAGGEFHEMSSKCNMFLDPSGFSSEDITSAFNIPRTSSIAKAKRPSVSFAEGT
RFSPKERRGSAQDSGALPGHPRNKPKSPWGVLMLSALQSQGSAARTADEDGAEGEEGEDE
VDVQATDNQESSCEAGDQEVDRTSSRATLQVPGASGRKWTMSNPAHKGTQLPTSASDAQV
GVINKVTTVYVTVGKAGRPVSKTETSSEGPVQAMLRRLGSLQRQREQESGRPKPKGAEGI
TKPPRRKLGARASVWEEGGTPGSEVGICKPIRRKHASLNFSDTAGGNDTPSSESGTPKRP
LSSNLQSVPELASADSGSDLRAEGGDLSTGKPQGTYLTVGPAGDAVSLTEVIANKGAVVS
VIDEPCYENVIIKHS
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggagcttctccttagagctctgagtgctctgctctgcttctcgctgtcctcacaaaac
ctggatcctgatgggaggaacgtctgccacaatatcagggacccctccaccctggtctgc
tgcactggatggcgtcaagagggaaaagagtgcaccatacctgtgtgtgagggtgagcag
gcctgccagaaggatgagatctgtgtgtatcctggagtgtgtcgctgcccagctggctac
tacggagctcactgtaaaacacgctgtccttctgagttctgggctccagactgtcgccag
gtgtgtcagtgctacccacacggccactgtcaccccgtcaccggtgagtgcacttgcaac
tccaaccgttggggtccgctgtgtcagtacacctgcaagtgcgcccggcacggccactgc
cacccggtccatggaaactgcacctgcgacgagggctggtggatgtcaacctgctccaag
ccgtgccagtgcttcatcggggggtctgtgggccccggctgcgaccagctaacaggccgg
tgtcagtgcaacaggggccactgggggatgaaatgtcccatcagttgcaactgttttctg
tcgccatgtaatgagcgtaccggtgtgtgtgagtgcgagtcaggctggtggggtccaagc
tgtgaccgccgatgtaactgtgatctcacacacagcagctgtgaccaggccaacgggcag
tgcctgtgccacgcagggtaccagggtctcttctgcagccagccctgtgaagctgggaag
tacggcagtggttgtaaaatgagttgtgggtactgtaaagacaatcagctctgctctgcc
accgatggcgcctgtgatgcctgcgagtccggctggaatgggacacgatgcgaccacccg
tgtccggctggttcctatggtgacggctgccaggagaagtgtccacgctgcagaaataac
gaaccctgtgaccccataactgggacatgttggaggtgtgaccctggatggactggaccc
aggtgtgaggaggcctgctctaacaggacgtttggagatgcctgcagcttcctgtgtagc
ccgtgtttccatggtaactgccatcatgtgacaggaagatgtgtctgtcagccaggcttt
cagggagagagctgtaacagcacctgccctaacctgcagtttggcctcaactgttcctcc
atctgtgactgtggtgaggtgggctgtgacccagtcactggtgtctgccccaacagtggc
agagctgctgtactagcaggtgtgctggttcctttgctcctgttgctgcttgctgtcctc
tgctgctgtttatgttgtggaggaggtcctgttgatggcaaagacagggcgactgtggcc
gaggggggttggtcagttaggatgaaatatcatgtctacagcgtcctggctaacatcggt
gctgccctcccctgtatttctgattggtcctctgggctgcctcgtgtcactgtctctcac
catgacccagagctgacgttcaaccacagcttcattgagcctccttcctgtggctgggtg
acggaggggtcgtcctttgacactgatgaggaggagggagaggcgctctactgtgtccct
ccaagagaagacatcccttcagtagcgggtggcgagttccacgagatgagctcaaagtgt
aacatgttcttagacccatctggcttcagcagtgaggacatcacctcggccttcaacatc
cctcgcacctccagcatcgccaaggccaagaggccgtctgtctcttttgcagagggcacg
cgctttagccccaaggagaggcgtggctcggcccaggactcaggcgctctccctggacac
ccacgcaacaaacccaagtcaccttggggagttttgatgctgtctgccctccaaagtcag
ggaagtgcagctagaactgcagacgaagatggagccgagggcgaggagggggaagatgaa
gtggatgtgcaggcgacagacaatcaggaatcaagctgtgaggcaggggaccaggaagta
gacagaacctcttcccgggccaccctgcaggtccctggggcatcaggacgaaagtggacc
atgtccaacccagctcataaagggacccagttgccaacatctgcctctgatgctcaggtg
ggggtcataaataaggtcaccacagtgtatgtgactgtgggtaaagcaggtaggcccgtg
tccaagacggagacgagctctgaaggccccgtccaagccatgctgcggcgactcggcagc
cttcagagacaaagggagcaggagtctggcaggccaaagcctaaaggagctgaagggatt
accaaaccacccaggaggaagcttggagctcgggcaagtgtatgggaagagggagggaca
cctggaagcgaagttggcatatgtaagccaatcaggagaaagcatgcttctctcaacttc
tctgacacagctggtggtaatgacactccatcctcagagagcggcactccaaaaaggcct
ctgtcgtccaatttgcagagcgtgccagagttggcttcagctgattcagggtcagatctg
agggctgagggtggtgacctcagtacagggaaacctcagggcacctacctgactgtggga
ccagccggggacgctgtgagtctcactgaggtcatcgccaataaaggtgcagtggtcagt
gtgattgatgaaccctgctatgaaaatgtcattattaaacactcataa
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