Etheostoma cragini (Arkansas darter): 117942203
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Entry
117942203 CDS
T07493
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04137
Mitophagy - animal
ecra04140
Autophagy - animal
ecra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117942203 (hif1al)
04137 Mitophagy - animal
117942203 (hif1al)
04148 Efferocytosis
117942203 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117942203 (hif1al)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
117942203 (hif1al)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
bHLH_HIF1A
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
117942203
NCBI-ProteinID:
XP_034723444
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All DBs
Position
3:complement(27746539..27766405)
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AA seq
673 aa
AA seq
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MKKKEETVVVKRTGSEQRKLRSRDAARSRRSQETEVFYELARTLPLPRRVCTHLDKSGIM
RVALSFLRMHGFLRPGKNLKEEIEEEEEEDPMGAFYPQALAGFVMVMTEEGDMIYLTESV
SRYLGITQLELLGQSIYDFVHPCDEEELRDLLTPRPGLSKKPLAEQPSERNFFLRMKSTL
TSRGRTVNIKSATWKVFHCTGHMRQVAGDSMSPSAGGVMTLLCEPIPHPSSVEFPLDTCT
FLTRHSMDLRFTHCEGRVAELVGYQPEDLIGRSAYEFYHALDSNHINKSLHTLLSKGQVS
TRQYRFLANNGGFVWAETQATVLYSSKISQPEAIVCLNFILSAVEQPDVVFSVEQIRCGR
LPEAEPSSPVLVQENCGTLDFSDSDSEHLRSSAELFNKLKEKPEELLLLAPAAGDAIIPL
TGDLVELSFASPPSPPSPHSVPDHPQDLCTPQLRQLLSPIFSPITPPLSSSSAASSPDPE
PVLSPCEEEREVTDTSMVEQFFAVWPEDNQQKGETQEPMEMMDLDMLAPYISMDDDFQLT
VFSSLPEEADQPPSSSLSEPPAVTPTVPVSRKRTRTPEEVGLSQLMIQDKRQKPDPSSIE
EELLLSHRFLGSLEETYQSDVFLDSGPGIKNPLLTDRDPVLGGIQGLCDTAALMRDIFTP
RQPDLSPPLSPMT
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaaagaggagaccgtcgtggttaagcggactggttcggagcagaggaaactg
cgatctcgtgatgcggccagaagtaggcggagtcaggagacggaggtgttttatgagctc
gcccgcactctgccgctccctcgtcgagtctgcacacacctcgacaaatccggcatcatg
agagtcgccctcagcttcctgcggatgcacggcttcctcagacccggtaagaatctgaaa
gaggagattgaagaggaggaggaggaagatccaatgggtgctttctatccccaggctctg
gcaggcttcgtcatggtgatgaccgaggagggagacatgatctacttgacagaaagcgtc
agcagatatctcggaatcacgcagctggagctgctgggtcaaagtatttatgactttgtt
catccctgtgatgaggaggagctccgagacctgctgactccacgtccaggtttgagtaaa
aagccgttggcagaacagccaagtgagaggaacttcttcctgcggatgaagagcactcta
accagcagggggcgcaccgtcaacatcaagtctgctacctggaaggttttccactgcacc
ggtcacatgcgtcaggttgctggtgactccatgtcgccctctgcaggcggagtgatgacc
ctgctgtgtgaacccatccctcacccgtccagtgtggagttccctctggacacgtgcacc
ttcctcacccgccacagcatggacctgcgcttcacacactgcgagggcagggtggcagag
ttagtgggataccaacctgaagatttgattggccgctcagcctacgagttttatcacgca
ctcgactccaatcacatcaacaagagcctgcacacattgctgtccaaaggtcaggtgagc
accagacaataccgtttcctagccaacaacggcggctttgtctgggccgagactcaggcg
accgtcctctacagcagcaagatctcgcagcctgaggcaatcgtctgcctcaacttcata
ctcagtgccgtggagcagccggacgtagttttttctgtggagcagatccgttgtggccgg
ctgcctgaagctgaacccagctcacctgtgcttgtccaggagaattgtgggacacttgac
ttcagtgactctgacagtgagcatctccgcagctccgcagagctcttcaacaaactgaag
gagaagccagaggagcttctcctgttggctcctgctgccggagatgccattatccccctg
acaggagatctagttgagctgtcgttcgccagtcctcccagtcctcccagtccacactcg
gtgccggaccaccctcaggacctgtgcaccccccagctgcgacagctcctctccccaatc
ttcagccccatcactccacctttatcatcatcatcagcagcttcctcacctgaccctgag
ccagtgctgagcccctgtgaggaggagagagaggtgacggacaccagcatggtggagcag
ttctttgccgtttggccagaagataatcagcagaaaggagaaacacaggagcccatggag
atgatggatctggacatgctggctccttatatctctatggacgatgacttccagctaacc
gtcttcagcagtttgccagaggaagcagaccaacctccgtcctcctctctgtctgaaccc
ccagctgtcacacccacagtcccagtgagcaggaaacggactcgaaccccagaggaggtg
gggctgtcccagctgatgattcaggacaagagacagaaaccagatccttcctcaattgaa
gaggaactgctcctcagccacagatttctgggctctctggaggaaacctaccaatcagat
gtgttccttgactcgggtcctggaataaaaaaccctcttctcacagacagagaccctgtt
ttaggaggcatccagggactctgtgatactgcagctctgatgagggacatcttcacacct
cgtcaaccggacctgtctccgcctctctcccccatgacttga
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