Etheostoma cragini (Arkansas darter): 117942282
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Entry
117942282 CDS
T07493
Name
(RefSeq) protocadherin Fat 4
KO
K16669
protocadherin Fat 4
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117942282
Cell adhesion molecules [BR:
ecra04515
]
Cadherins
Cadherin related
117942282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
EGF
Cadherin_CELSR2_9th
EGF_TEN
hEGF
EGF_CA
EGF_2
Ig_Shg
Motif
Other DBs
NCBI-GeneID:
117942282
NCBI-ProteinID:
XP_034723569
LinkDB
All DBs
Position
3:5289675..5302695
Genome browser
AA seq
2535 aa
AA seq
DB search
MQNEDSDGLFSITPNGMFQILHSLDRERKSLYLVTIIAVDSGLPPLTGTLTINVLVDDVN
DNRPEFTEVVYNTIVSEDSPTGTVFAMITASDNDEGVGGEIRYSMENIDVPFAIEKTSGE
LFTTDVLDRETVAIYRLIVIGRDEHPTQPLSSSVLVTVLIGDINDHWPQFMNSPYVAYVP
TEMAPDSVVCAVRATDGDTEMNAELHYMLYGQSSDLFSIHSYSGTVFASSALQGMKDIIV
NVHVEDSGENPKFDITTISIRFQNFSEFPEMNVDVVSDSLSEDEPVGTLVAVVSAASIRA
EPVSFYLASGNFEDMFHVEQLSGVLTVENPLDYENKKELTLLIEARDSGSPPFSSFAEIH
INISDVNDHFPQFTQADYRCEVFENSPPSWVCDVLAIDSDSGSYGTVQYNITGGNTDTFF
TIDPENGFLSTTASLDRENIPEFNLTVEAAELNNPLHKDTATVIVVVLDRNDNAPRFSQI
FLTEVAEDSPVGHTIIQVTVTDDDIGANAVINYSILDQTDEMPFNIDFITGCVRVGRLLD
REMQDHYILKVNANNSAWSISTDVTIVITDVNDNRPVFSDHFYSVVLPETKDKEVFVLQV
LATDADMGQNCDILYVIEPSNEQFWVNGSSGEIYTKQPLLLHNPAFKIYQFTVIAFDCGS
VPLYSEATVTVRLEPYNYHPPMFLPMQPLIAIPFHMAVGTEVVQFTAIDPDVSNISVGIE
YVVNGGNASDFFWIQTDNGKVMLTQSLVESIHLFFTLSVLAKDQGFPSLSSQTEITFEIT
GRNQFSPSFRELDVVFSVPEDLPVGSVIGRIQAEDKDRGPNGAVVYCITTENLYFPFSVG
DKSGLLTLIKELDFEKESIYHVQIKAVDGGWVSKTGMLNVTVVVMDVNDNPPVFLSPEYT
TSVPENSEIGTNVLVVKAADADSGAQISYSLIAGHVDKFAIDSRNGTITTLDVFDYEREQ
IFGITVKASNIGGHTLFSLAHVVIQILDVDEFTPTFRKKVYNFSVLKNVPVGTRIGNVIA
TDYDQGSEGQVFYLMFGQNKYVGFEIDKLSGDIYTTVSLRKQGNSDIVLKVLAKNSGVIT
GMDVDETLVHIRVIDTNDAPVFTYALYLANVAEDSPVGTSLVTVSALDEDSILNWNRFFF
SIANGNTNFSFAVDPSSGVISVHSPLDRELWAVYNLTVTATDNGSPPATGTTNVIVIIDD
VNDSVPKLTITEAQVKENQPEGTMVARLNASDSDLPPNQGPFTYWLVNPSTASVFSLTPD
GVLFTTQTIDREQISAYRVLVAVRDAGIPPLSSTTMIHIKIVDENDNPSQPRNIFIEVKY
FGSSFQGGMIGNVHPEDQDESDTFRCTIKSGHLNMFTISNGTCELWSSPFQGEATINITI
EATDQLHFPVNNSIYVTYKGFTNASIDSCILFYVSASSMEEFMSNKYLRFVKALDSLFNL
QASKTHVFGIKHIGSKILLLAAVKNYNGQYLSKEVAIGISAGHKKLLEAQSNVTISHITS
DPCLTSPCQNGATCNKNTYISQDVVVLESSAVIFVSPHKEIFNCTCLAGFTGTLCEDDVD
ECEVNPCENEGTCVNVPGSFYCQCQSGFSGSFCSADVDKCLKVKCQNRGTCIHTQDGYHC
HCVPGFEGQMCERAVDHCESTPCGQGRCINSQTGFSCHCPFGVSGAHCEEHSHGFEVLSF
MEFPPLDRRINLISLEFATVQRNSLLLYNPGGSSSREFFALEILNGAMHLSYDLGSGPVR
LHTNKHVADGYFHSVTARRIGHMGSLHVDNCTDDENNGFCFSQSDGSSLKRTLDVGSNMT
LGGTRTFESILLNPAQIKTHDFVGCIRNIHVNGILLTPSMALATYNILDRCPRTTPSPCH
SHPCQNGGVCHDLWSDYLCECKSRFTGSNCATEMSEQLVLQFTGNDYIEYVIKERFKRDY
LLENLVDGEKKGERDQTVINIKFKTQDNGLLLFVVGETGYTMLKIKDRKPVYMSKEALSG
HQSEFTVDSPVADGVWHVLSLFSNGQITLLLLDGKSVLNISDSRMDLNPVSVEKIIFGAL
LTGDLKLQQSGFNGCVQYLNVSGHTLPVSGHSVMVDARPSSTLVQLNCSSTGVCLPSPCS
EEDTARRRCLSGPTVHNRSCICLHNISEHACDICIATTESLNQCSEAQRSAPLWLIAVIL
PLISIPVIGMCVALYRVRRKNAKCQRDSSPPKTEQGTDNVRFCFDDKRTLTDDESAKIEK
QPNPMRNDQQRLSGEFYSDASLSSVQQVPNSELEYYEIGSICSALHSDTASLTLSWHKHL
YSPTCVKANPKRWGDLRMLLAGFKKECFSEERAKNPTEPQDVAFLNKQLLTKIDPERSQP
KFLEPAQCLTFEEIGKLYTPLEKKMSQPASLEFGPDKSTMMNGASSDSETGSTFTWSESE
CGQFSTISARTYIHDLTSLSACSFRQQGIVPVRSFLKRSCHSAAGQHKAESAPSSMFEQW
GSLLNMHLPFSSYAPEWNPVCWSQVSSCLSSATINFCFIYPVLPYPSNTATLPLEPDSSY
RSTPVVNQSRTSTTT
NT seq
7608 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatgaagatagtgatggtttgttctccatcactcccaatggcatgtttcaaatt
ttacacagtctggacagagagaggaaatcattgtacttggtaaccatcatcgctgttgat
tcaggattgccacctctaacaggaactctaaccataaatgtcctagtagatgatgtcaat
gataaccgtccagagtttactgaggtagtctacaacaccatagtgtctgaggacagtcca
accggcactgtgtttgcaatgataactgcatctgacaatgatgagggtgtcggcggggaa
ataaggtattccatggagaacattgatgtgccgtttgccattgaaaaaacatctggagag
ctgtttacaaccgatgtcctggacagggagacagtagccatttacaggttgatagtgatt
ggcagagatgagcatcccactcagcctctttcaagctcagtgcttgttactgttcttatt
ggagatattaacgaccactggccccagtttatgaacagcccctacgtggcctatgtgccc
actgagatggctccagactcagtcgtttgtgcagtaagagctacagatggagatactgag
atgaacgcagaactgcattatatgttatacggacaaagttcagatctgttttctatccat
tcgtacagcggcactgtatttgcttcaagtgctctccagggaatgaaagatatcattgtc
aatgtacatgtggaagactctggagaaaatcctaaatttgacatcactacaatcagtatc
cggtttcagaacttttctgagtttccggagatgaatgtggatgttgtgagcgattccctc
tctgaggatgagccagtgggaacattagtggcagttgtctccgcagcgagcatcagggct
gaacctgtctctttttatctagcttctggaaactttgaagacatgtttcatgtggaacaa
ttgagtggcgtgctgacagtggagaaccctctggattatgagaacaaaaaggagttgact
ttgttgatagaagccagagattctggctcgcctcctttctcctcatttgcagaaattcac
atcaacatcagtgatgtaaatgatcacttccctcagttcacccaagccgattacaggtgt
gaggtgtttgagaactccccgccatcctgggtttgtgatgttctcgccattgactctgat
tcaggcagctacggcacagtgcagtacaacataacaggaggaaacactgatacgtttttc
acaattgaccctgagaatggtttcttgagcaccactgcaagcttagacagagaaaatatc
cctgaatttaatttaacagttgaagctgcagagttaaacaaccctctacataaagacaca
gcaaccgttattgtagttgttttagacagaaatgacaacgcacctcgcttttcacagatt
ttccttacagaggtagctgaggattcccctgttggacacacaattatacaagtcaccgta
actgatgatgatattggtgccaatgcagtaattaattactccatacttgaccaaactgat
gaaatgccatttaatattgacttcatcactggctgtgtcagggttggaagacttctggac
agagagatgcaggatcattatatcttgaaagtaaatgcaaacaattcagcatggagcatc
agcactgacgtcactattgtcataacagatgtcaatgataatagaccagtgttttccgat
catttttacagcgttgtcctccctgagacaaaagataaagaggtgtttgttttgcaggtt
cttgctacagatgcagacatggggcaaaactgtgacattttgtatgttattgaaccttca
aatgagcagttttgggtgaacggttcctctggtgagatatatacgaagcagccactgctg
ttacataatcctgcgtttaaaatataccagtttacggtcattgcatttgattgtggtagt
gttcctctttacagtgaagccactgtcacagtaagattagaaccatataactaccaccca
ccaatgtttttacctatgcagcctctgattgctatcccctttcacatggctgttggtact
gaggtggtccaatttacagcaatagatccggatgtcagtaacatcagcgttggtattgaa
tatgttgtgaatggaggtaatgcatctgatttcttctggatccaaacagacaatggaaaa
gtaatgttaactcaaagtttggtggagagcatacatttatttttcactttatcagttctt
gcaaaagatcagggtttcccctctttgtcatcacagactgaaatcacttttgaaataact
gggaggaatcaattttctccgagctttagagagctggatgttgttttctctgtccccgag
gacttgccggtaggatctgttattggaaggattcaagcagaagacaaggatcgtggtccc
aatggtgccgttgtgtactgcattaccacagaaaatctatatttcccattctctgtagga
gataaatctgggctactaacactgatcaaagagcttgactttgaaaaagaaagtatttat
catgttcaaatcaaagccgtggatggaggctgggtctccaaaactggcatgttaaatgtc
acagtggtagttatggatgtaaatgacaatcccccagtctttttgtccccagaatatacc
acgtcagtgcctgaaaactctgaaattggaacaaacgttctagttgtgaaggctgcagat
gcagattcaggtgcacaaatatcctattctcttatcgctggccatgtggataaatttgca
attgattcaagaaatggcaccatcaccacattggatgtgtttgattatgagcgagagcag
atctttggtattacagtcaaagcttcaaacattggtggccatactttatttagtttggca
cacgttgtcatccaaatcttagatgttgatgagttcacaccgacattcaggaaaaaagta
tataacttttctgtattgaaaaatgtacctgttggaactaggattggaaatgtaatagct
acagattatgaccaaggttctgaaggtcaggtgttttacctgatgtttggtcaaaacaaa
tatgtgggctttgaaattgacaaactttctggagacatctacacaactgtcagtttgaga
aaacaaggcaacagcgacatagttttaaaagtactggcaaagaactctggcgttatcact
ggcatggatgtggacgagactttggtccacatcagggtgattgacacgaacgatgcaccc
gttttcacttatgccctttatttggccaatgttgcagaagacagccccgttgggacatct
ttggtaactgttagtgctctggatgaggactccatcttgaactggaatcgtttcttcttc
agcattgcaaatggaaacacgaacttctcttttgccgttgatccatccagtggtgtcata
tcagtacattctccacttgacagagaactgtgggcagtttataatctgactgttacagcc
actgataatggctctccaccagccactgggactactaacgtcatagtgattattgacgac
gttaacgacagtgttcccaaactcacaattactgaggctcaagtgaaggaaaatcagcct
gaaggcacaatggttgccagattgaatgcatctgattctgatttgcccccaaaccagggc
ccttttacttactggttggtaaatccttcaacagcaagtgttttttcactgactcctgat
ggagttttattcaccacacagactattgaccgggaacaaatctctgcatatcgagtcctg
gtggctgtcagggatgcagggatccctccgctgtcatccacaaccatgatccacatcaag
attgtggatgaaaacgataacccttcacagcctagaaatattttcatcgaggtgaaatac
tttggcagttccttccaaggaggcatgattggcaatgtccatcctgaggatcaggatgag
tctgacacattcagatgcaccatcaaaagtggacaccttaacatgtttaccatatctaat
ggcacatgtgagctgtggtcgtctccttttcaaggcgaggctacaatcaacatcactatc
gaagctacagaccagcttcacttcccagtcaacaacagcatctatgtaacctacaaaggt
ttcacgaatgcttctatagacagctgcatattgttctatgtgtcagcctcctcaatggag
gagtttatgtccaataagtatttgcggtttgtgaaagctctggacagtctgtttaaccta
caggcctctaagactcatgtatttggaatcaaacacatcggcagtaaaatccttctattg
gctgcggtgaaaaactacaatggtcaatatcttagcaaagaggtagccatcggtatctct
gcaggccataagaaattacttgaggctcagagcaatgtgacgatttctcacatcacaagt
gatccatgtctcaccagcccttgtcaaaatggggcgacgtgcaacaaaaacacttacatc
agtcaggatgtggttgtcctggaaagctcggcggtcatctttgtgtcaccccataaagag
atttttaattgtacctgtctagccggcttcaccgggacactgtgcgaagacgacgttgac
gaatgtgaggtgaatccctgcgagaatgaaggcacatgtgtgaatgtcccaggaagtttc
tactgtcaatgtcagagtggcttctctggctctttctgctctgctgatgtagataaatgc
ctgaaggtgaagtgccaaaacagaggaacttgtattcacactcaagatggatatcactgc
cactgtgtgcctggatttgaagggcaaatgtgtgagcgggccgttgaccactgtgaatca
acgccttgtggtcagggcagatgcatcaattcacagacaggattctcttgtcattgtccc
tttggggtcagtggagcccactgtgaggagcacagtcacggctttgaggtgctgtctttc
atggagtttcccccgttggatcgaaggattaatttaatctctctagagtttgcaacagta
cagagaaactccctgctcctgtacaaccccggaggatcctccagcagggagttctttgca
ctggagatactgaacggggccatgcatctctcctatgacctgggctcaggacctgtgagg
ctgcacacaaacaaacatgtggcagatggatatttccacagtgtgactgccaggaggatt
ggccatatgggttctttacatgtggacaactgcacagatgatgagaacaatggattttgt
ttttcacagagtgatggcagtagcttaaagagaacactagatgttggcagtaatatgaca
ctgggaggaacaaggacatttgaatctattttactgaatccggctcagataaaaacccat
gactttgttggatgtattcggaacattcacgtaaatggaatcttgctgaccccttcaatg
gcccttgcaacatataacatccttgataggtgtcctcggacaacaccatccccatgtcat
agccacccatgtcaaaatggcggcgtgtgccatgacctttggtctgactacctttgcgag
tgcaaaagccgttttactggaagcaactgtgctacagaaatgtcagaacagcttgtattg
caatttactgggaatgactacattgagtatgtcatcaaggagcgattcaaaagagactac
ctgttagaaaacttggtggatggtgaaaaaaaaggagagagagaccaaacagtaatcaat
ataaagttcaagacccaagataatggattgttattgtttgttgttggagagacaggatac
actatgctgaagataaaagacagaaagccagtgtacatgtccaaagaggcactgtcagga
caccagtctgagttcactgtggactctcctgtggctgacggggtctggcatgtcctctct
ttgttcagcaacggacagattacccttctgcttctggatggtaaatcagtcttgaacatc
agcgacagcagaatggatctcaatcccgtcagtgtggaaaagattatttttggtgcactt
ctgacaggtgatttgaaactccaacagtcagggttcaatggctgtgtgcagtatctcaat
gtaagcgggcacactctgccagtcagtggacacagtgtgatggtggacgcccggccgagc
tctacccttgttcagttgaactgcagctctactggtgtctgcctcccctcgccctgctct
gaggaggacacagccaggaggcgttgtctctctggacctactgtgcacaacaggtcctgc
atctgtttacataacatttctgagcatgcctgtgatatctgcatcgccacgacagagagc
ctcaatcaatgctctgaggcgcagcgcagcgctcctctgtggctcatagctgtgattctt
cctctaatctccatcccagtgataggaatgtgtgtcgccctttacagagtgaggcggaag
aatgcaaagtgtcagagagatagttcgccaccgaaaacagagcaagggacagacaatgta
aggttttgctttgatgacaagagaacactcacagatgatgagtctgcaaaaatagagaaa
caacccaacccaatgaggaatgatcagcagaggttaagtggggagttttacagtgatgcc
agtctgtcaagtgttcagcaggtgccaaacagtgagctggagtattatgaaattggcagc
atctgtagcgcacttcattcagacactgcttcactgacactcagctggcataaacatctg
tacagcccaacatgtgtgaaagctaatcctaaacggtggggagatttgaggatgctgtta
gcaggatttaagaaagaatgcttcagtgaagagagggcaaaaaatcctacagaacctcaa
gatgtagctttcttaaacaagcagctgttgaccaagattgatccagagcggtcccaacca
aagttcctggaaccggcccaatgtctcacgttcgaggaaattggtaaactatacactcct
ctggagaaaaaaatgtcacaaccagcatccttagagtttggacctgacaagtccaccatg
atgaacggtgcctcatctgacagtgaaacaggcagcacattcacctggtcggagtctgag
tgcggacagttttctaccatcagcgccaggacatatatacatgacctgacatccctgtca
gcgtgcagcttcaggcaacaaggcatcgtgcctgtccgctcattcttaaaacgctcctgt
cactctgctgcaggtcagcacaaagctgagagtgctccctcaagtatgtttgagcaatgg
ggaagtcttctaaacatgcatctacctttcagcagctatgctcctgagtggaatccggtg
tgctggagtcaggtgtccagctgcctctcatctgccacaatcaacttctgcttcatatac
ccggtcctaccctatccttccaatactgccacactgccattggaaccagactccagctac
cgctccactcctgttgtaaaccaaagcagaaccagcaccaccacttga
DBGET
integrated database retrieval system
