Etheostoma cragini (Arkansas darter): 117942362
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Entry
117942362 CDS
T07493
Symbol
trip12
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117942362 (trip12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117942362 (trip12)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
117942362 (trip12)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
HECT type E3
117942362 (trip12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
TPR_TRIP12_N
WWE
Motif
Other DBs
NCBI-GeneID:
117942362
NCBI-ProteinID:
XP_034723665
LinkDB
All DBs
Position
3:17213125..17257883
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AA seq
2061 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVAGRLQSEQVKHKANSPPESRRPNSKASKAS
ASSATGLSRGHGSRSRSDLTVSVASFVLQDEPEAAGTSEQERPGHQSKSEGTRGLKRSEA
PDQISTFGPTPAKKPKSLPPPRDNTSETKKGPAKSKKRSLASEPPASSGRGQSKKSGAAG
ASPIQKRKKTDSLPGLSSTAGSLPNRTEGRTAKPTKLASKSAASAKAGCSNVTDSSSSSS
ASTSSSSSTTGTNSATTQGARVKQGKDQTKARRSRSASSPSPRRSTRDKEQAKTASSSKF
EWAARFNPKVNLPKPKLSLPGSSKTETSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEASQGA
SASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSG
ASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITLLQMEH
NFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEMLSRRH
SKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVADSLPLLTQRLTH
QDKKSVESTCLCFARLVDNFQHEENLLQEVASRDLLTNIQQLLVVTPPVLSSGMFIMVVR
MFSLMCSNCPCLAVQLMKQNIAETLRFLLCGASNGSCQEQIELVPRSPQELYELTSLICE
LMPCLPREGIFAVDVMLKKGSAQTTEGAIWQWRDDRGLWHPYNRIDSRIIETAHQNGEDE
ISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPNTGSHQEVRREDARAQLMKE
DPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIYFADAELLKDVLRNHAVSSH
IASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVYFRREGVMHQVKNLSESESFLVTSPPK
ACPSGTASLCTTTISTASTTSANNATPELGSPSFQHSMDDSLDLSPQGRLSDVLKRKRLP
KRGPRRPKYSPPRDDDKVDNQAKSPTSTQSPKSSFLASLNPKTWGKLGAQTNNANSEPSR
TAGVSGLARAPPKDSISNNRDKIKAWIKEQASKFVERYFNSENVDGSNPALNVLQRLCTA
TEQLNLQVDGGMECLMEISNIVSESDVSSFEIQHSGLVKQLLVYLTSNTDRDLLSRDVRL
KRFLHVFAGCPVPGTEPVSRLDPTENGPYLALVHKMNSCLSQMEQFPVKVHDFPSGNGNG
SRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGYGRIR
EEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQYSLQAE
EERESTDDEANPLGRAGIWTKTHTIWYKPVREDEDGSKDAVGGKRGRAQTAPTKTSPRNA
KKQDELWHDGVCPSVINPLETYLTSEPPETITFDDPSLEVNLLLRVLHSISRYWFYLYDN
AVCKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLIELGKTCPFFFPFDTRQMLF
YVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINRDELLKQAESVMQDLGS
SRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLANPKGSQEATKYMF
SARGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWMLRHEM
SISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDRSQTRETLQQALESLNMNGCSVEDLG
LDFTLPGYPNIELKKGGKDFAVTIYNLEEYLRLVVYWTLNEGVSRQFESFREGFESVFPL
HHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQ
RLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSI
EIMREKLLIAAREGQQSFHLS
NT seq
6186 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccacacagtcgcaggaaggttgcagtcagagcaagtcaaa
cataaagcaaattccccacctgaaagtagaagacctaattctaaggcttccaaagcctca
gccagctcagccactggtctgtccagagggcacggctcaagaagcagaagcgatcttact
gtgtccgtggcttcctttgtgttgcaagacgagccagaggctgcagggacatctgaacaa
gagcgaccaggccaccagtcaaagagtgaaggcacccgagggctgaagcgaagtgaagct
cctgaccaaattagtaccttcggaccgacccctgccaagaagcccaaatcgctcccacca
cccagagacaatacctcagagacaaagaaaggcccagctaagtccaagaagagatcactt
gcttcagaaccacctgcatcgtcaggtcgaggccagagtaagaagagcggggccgctggg
gcctcaccaattcagaaacggaagaaaacagactccctccccggtctaagcagcaccgct
gggtccctccccaatcgtaccgagggcagaactgcaaaacccaccaagctggcgtctaaa
tcggccgcctcagccaaagctgggtgtagcaacgtgacagactcctcctcctcctcctct
gcctccacctcttcctcttcttccaccacaggcaccaacagcgccaccacgcagggcgcc
cgagttaaacagggaaaagatcagaccaaggcacgacgctctcgctcagcctcaagccct
tccccccgccgtagtacccgtgacaaggagcaggccaaaacagccagctcttcgaagttt
gagtgggcagcacgcttcaaccccaaagtaaacctgccaaaacccaaactctccttgccc
ggatcctccaaaactgagacctccaaacctgggccatcaggattacaagctaaactagca
agtttaaggaaatccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacgccagaagaccacgggctcctgtgccagcaccagtcggcggggctca
ggcctgggaaagcgcggggcagccgacgctcgccgacaggagaaaatggccgactctgac
aacaaccaggatggggccaactcgtcagccgctcgcactgatgaggcatcacaaggggct
tcagcttcaagctctgttgctggagctgtgggcatgaccacctctggagagagcgaatct
gacgactctgaaatgggaaggcttcaagccctactggaggccaggggtctccctccacat
ctttttgggcccctgggaccccgcatgtcacagctgttccacaggactattggcagtgga
gcaagctccaaggctcagcagctactacagggtctgcaggccacaggtgatgagtctcag
cagctccaagccgcgattgagatgtgccagctgctggtgatgggcaatgaggaaacactt
ggaggattccctgtgaagagtgtggtgcccgctttgattacactgttacaaatggagcat
aactttgacattatgaatcatgcctctcgtgcgctcacatatatgatggaggcactccct
cgatcctctgctgtggtggttgatgctattcctgtcttcctggagaagcttcaggtgatc
cagttcattgacgtagcagagcaggccctgactgccctggagatgttgtcaaggcgacac
agcaaagccattttgcaggctggtgggcttgctgactgcctcctctacctagagttcttt
agcatcaatgctcagaggaatgccttggccattgcagccaactgctgtcagagcattact
ccagatgagttccactttgttgctgattctctgccactgttgactcagagactcacacac
caggataaaaagtcagtcgaaagcacttgcctctgtttcgccagattggtagacaacttt
caacatgaggagaacctgctgcaggaggtggcgtcacgggacctgttgaccaacattcag
cagctgctagtagtgacccctcctgttcttagctcggggatgtttatcatggttgtgcgc
atgttttccctgatgtgctctaactgcccttgcctggcagtccagctcatgaaacagaac
atagcagaaactctacgtttcctcttgtgtggtgcatcaaatggcagctgccaggagcag
attgaactggtaccccggagcccccaggagctctatgaactgacttccctcatatgcgag
ctgatgccatgcctgcctagagagggcatctttgcagttgatgtaatgctgaaaaagggc
agtgcccagacgacagagggagcgatctggcagtggagggatgacaggggactgtggcat
ccttacaaccgcattgacagccgcatcattgagacagcacaccagaacggggaggatgag
atcagcttgtcaaccctgggccgtgtgtacacaattgactttaactctatgcagcagatt
aatgaagacacaggaactgcacgtggtatccagaggaaaccaaatcctcttgccaaccct
aatacagggagtcaccaggaggttcgtcgagaagatgcacgagctcagttgatgaaggag
gaccctgagctggcaaagtgcttcatcaaaactctgtttggggtcttgtatgaagtgtac
agctcatcagccggccctgctgtcagacacaagtgccttagagccatcctcaggatcatc
tactttgctgatgcagagctactgaaggacgtgctgaggaaccacgctgtgtccagtcac
attgcctcaatgctatccagccaggacctaaagattgtagtgggttctctgcagatggct
gagatcctcatgcagaagctgcctgatgttttcagtgtttatttcagaagagaaggtgtg
atgcaccaggtaaagaatttgtcagagtcggagagctttctagtcactagtcctccaaag
gcttgccctagtggcactgccagtttgtgcactaccaccatcagcactgcatccaccaca
tctgctaataatgcaactcctgagctgggctcacccagcttccagcacagcatggacgac
tcactggacctcagcccacaggggcggttaagtgatgtcctaaagaggaaacggctacct
aaaagagggcccagaaggcccaaatactctcccccaagagatgatgataaagtagacaat
caagccaagagccctaccagtactcagtcacccaaatcatctttcttggccagtcttaat
cctaaaacttggggcaagctgggtgcccagaccaacaatgccaactcagagccctcacgc
acagcgggagtgagtggtctggcaagggcacctcccaaggactcaatttcaaataacaga
gacaaaataaaagcctggatcaaagaacaggcaagtaagtttgtggagcgctacttcaac
tctgaaaatgtggatggcagcaaccctgcactgaatgtactccagagactttgcacagcc
actgagcagctcaacctgcaggtggacggtggtatggagtgcctcatggagatctccaat
attgtatcagagtctgacgtgtcgtcttttgagatccagcacagtggactggtgaagcag
ctcctggtctacctgacctccaacaccgacagagacttgctcagccgcgacgtgcggctc
aagaggttccttcatgtgttcgctggctgtccggttccaggaacggagcctgtaagtcgt
ctggacccaacagagaatggtccgtacctggcactagtgcataaaatgaacagctgtctg
agccaaatggagcagtttcctgtcaaagtgcatgatttccccagtggcaacggcaatggc
agcaggggctctcaggcattgaaatttttcaacacacatcagctcaagtgtcagctgcag
agacacccagattgcactaacgttaaacagtggaaaggcggccctgtgaagatagacccc
ctggccctggtgcaagccattgaaagatatctcgttgttagagggtacggccgaatcaga
gaagaggatgaagacagtgatgacgacggttcagatgacgaaatcgatgaatcacttgcg
gcacagttcctgaactctggcagtgtacgtcacagactacagttctacattggtgaccac
ctgctaccatacaacatgactgtataccaggctgtacggcagtacagtcttcaggcagaa
gaagaaagagagtcgactgacgatgaggcaaacccacttgggcgagctggcatctggacc
aaaactcacacaatatggtataagcctgtgagagaggacgaggatggcagcaaagacgct
gtgggtggaaagcggggccgagcccagacggctcccaccaaaacctcacctcgtaacgcc
aagaagcaggatgaactgtggcatgatggtgtgtgtcccagtgtcatcaatcccttagag
acatacctcacttcggagccaccagagaccataacctttgatgacccctctttagaggtc
aacctgctgctgagggtcctgcactccatcagtagatactggttctacttgtatgataat
gctgtgtgtaaggaaatcatccctaccagtgagttcattaacagtaagctgacagccaaa
gctaaccgccagctacaagacccactggtcatcatgacgggaaacatccctacttggctt
attgagctcggaaagacgtgtcctttcttcttcccctttgacacccggcagatgctattc
tatgtaactgcctttgatcgtgaccgagccatgcaacgcctactggacacaaaccctgag
atcaaccaatcagattcgcaggacagcagagttgcaccgcgtcttgacaggaagaagagg
acgataaaccgcgacgagttgctgaaacaggccgagtctgtgatgcaggacctgggcagc
tccagggcaatgttagagattcagtatgagaacgaggttggcacaggtcttggccccact
ctggagttctatgctctggtgtctcaggagctccagcgggctgatctcggcctgtggcgg
ggcgaagaggtcacgctggccaatcctaaaggtagccaagaggcaactaagtacatgttc
agcgccaggggactgtttgctgttcccttcggcaggacaaccaaaccagcacacatagcc
aaaatcaaaatgaagttccgtttcttaggaaagctaatggcgaaagccattatggacttc
agattgctggacttacccctggggctgccattttataagtggatgctacggcatgagatg
tccataagctcccatgacctggtgaacattgaccccggtgtggcaaagtccatccagcac
ttggaggatattatccgccagaagaagaggctggaacaggacagatcacagacgagggag
accctgcagcaggcactggagagcctgaacatgaacggctgctcagtggaggacctgggt
ttggacttcacccttccaggttaccccaacattgagctgaaaaagggcggcaaagacttt
gcagtcacaatctacaacctggaggagtacctcaggttggtggtgtactggactctaaat
gaaggagtgtccagacagtttgagtcgtttagggaggggtttgagtcagtcttccccttg
catcacttgcagtatttctacccagaggagcttgaccagttgctgtgtggtagtaaatca
gagacatgggacgtaaagacactgatggaatgctgtcgaccggaccacggctacacacat
gacagccgtgccgtacggttcctgtttgaggtgttgagcagctttgatgccgagcagcaa
agactttttctgcagtttgtcacaggaagccccagactacctgtcggtggtttccggagc
ctgaatccccctctgacgattgtgaggaagacatttgagtccacggagaacccggatgac
ttcctcccctcagttatgacctgtgtcaactacctgaagctgcctgactactccagcata
gagataatgcgagagaaactgttgattgcggcccgcgagggccagcagtctttccacctt
tcctga
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integrated database retrieval system
