Etheostoma cragini (Arkansas darter): 117942652
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Entry
117942652 CDS
T07493
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117942652 (chd5)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117942652 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
Motif
Other DBs
NCBI-GeneID:
117942652
NCBI-ProteinID:
XP_034724103
LinkDB
All DBs
Position
4:27634242..27689047
Genome browser
AA seq
2002 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDDGERNAVPLTPLDSFFSDNDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQSRVDSDLEETSEVEEERERPEVGSESENSTYGPTKKKKKKPKE
KKPRKKKREEEDDDDDNDDGNLKEPKSSSQLMQEWGLEDVQYGFTEDDYKTITNYKAFSQ
FLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVAQPT
AVGSGHPSPQLGPIKKAKTKEGKGPGVRKRSKSVKEVKKKPKPKKTKSKSGQSGKKKKAS
SSEEDFLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDYCEV
CQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDEEEEEEEEP
AGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKG
KVQKILHWTWGEPPLPAEPPAGPDGNPTDPLTKPPLKGHPEREFFVKWAGLSYWHCSWVS
ELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSEKRKSKDPHYAGMEERFYRYGI
KPEWMVIHRIVNHSYDTDGDVHYLMKWRDLPYDQCTWEVDDFDVPEYDSHKASYWDHREQ
ILGEDQRPLVVRKGKKLKEDHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEG
LNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWERE
FEMWAPDFYVLTYTGDKDSRAVIRENEFTFEDSAVKTGRKVFRMKKDTPIKFHVLLTSYE
LITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND
IQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDEMEAARAMGDNKEGEEGNVIHYDDDAISKLLDRSQDATEDTEIQ
NMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNL
GKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQMK
NEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSE
REFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVN
GKLSSPDLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPVPPEKNESLLGTAEDKET
TEQDSKKLSEQESSSAEPASVPEKAADSEESKASSEEKTGDERDRTESPSKKEPSVNPKE
SALKLSELSSTQTSPKMELCKDTEKSSEKGDTDSPLAKTEDKENKPAVADDMKNEDASEG
RLNGDKDNLEDMEESRKEDKNGYKVKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIW
HRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLL
EQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFTEVECLAESHQHLSKESLAGNKPANAV
LHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQPF
SQGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSLDS
LRDVATPDLKSGKPSDVICIED
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgaggatgacgatggggagcgcaacgctgtccccctcacgcccctcgacagc
ttcttctctgacaacgactccctcaaacaacaaaagaagaagaagcccaaaaagatgaaa
gaggggaaaatgcccaaagttaagaagaggaaaaaggagggaggaatccagtcacgggtt
gacagcgacctggaggagacctcagaggtggaggaggaacgggaacgtccggaagtcggc
tctgagagcgagaacagcacgtacggcccaaccaaaaagaagaagaagaaaccgaaagag
aagaagcccaggaagaagaagagagaggaggaagatgacgacgatgacaatgacgatggg
aacctaaaagaacccaaatcctccagccaactgatgcaagagtggggtctggaagacgtt
cagtatggcttcaccgaggacgactacaaaaccatcaccaactacaaagctttcagccag
ttcctcaggcctctcattgccaagaagaacccgaagattcccatgtcaaagatgatgaca
gtgttaggggccaagtggcgagagttcagcgccaacaaccccttcaaaggcgcatctgcc
accgctgtggccgccgctgtggctgccgccgtggaaacggttaccgtggctcagccaacg
gccgtcggcagtggccatccgagtcctcagctggggccaatcaaaaaagccaaaaccaaa
gagggaaagggaccaggagtcagaaagagaagcaagtctgtgaaggaggtcaagaagaaa
cccaagccgaagaagaccaaatcaaagtcgggccaaagtgggaagaagaagaaagcatcc
tcgagtgaggaggacttcctggaggaatccgactttgatgacatcagcatccacagtgcc
tctgtgctttctgacacctcgggggccgccaccaagaaaaaggctcgacgtgggcggaaa
aaaaggaaaaaagaagatggggacggttatgagacggaccaccaggactactgtgaggtt
tgccagcaagggggagagatcatcctgtgtgacacctgtcccagagcgtaccacctggtc
tgtctggacccggagctggagaaggctcccgagggcaaatggagctgcccacactgtgag
aaagagggtatccagtgggaggccaaagacgatgaggaggaggaggaggaggaggagccg
gcaggcgaggaagaggatgaccacatggagttttgcagagtgtgtaaagatggaggagag
ctgctgtgttgcgacacctgcccatcttcctaccacatccactgcctgaacccccctctc
cccgagatccccaacggggagtggttgtgtccacgctgcatgtgccctcccctcaaaggt
aaggtccaaaagattctgcactggacatggggggaacccccgttgccggctgaaccgccg
gcaggccccgacggcaacccaaccgatccgctgaccaagcctccactcaagggccaccca
gagagggagttcttcgtaaagtgggccggcctttcgtactggcactgctcctgggtcagc
gagctgcagttggagctgtaccacacggtcatgtatcggaactaccagcgtaagaacgac
atggacgaacctccgccgtacgactacggctccggagaggaggagctcaacagcgagaag
aggaagagcaaagacccccactatgctgggatggaggagcgcttctaccgctatggcatt
aaaccagagtggatggtcatccaccggatagtgaaccacagttatgatacggatggggat
gtgcattacctgatgaagtggagagacctgccctacgaccagtgcacctgggaagtggat
gattttgacgttccagaatatgacagccataaagcttcttactgggaccacagggagcaa
atactaggggaggaccaacgccccctggtggtgaggaaaggaaagaaactcaaagaggac
catccaaagagagaggtccctcctgatgctcccatcatagatccgaccatcaagtttgag
caccagccgtggtacatcaacgccacgggggggacgctgcacccgtaccagctggaaggc
ctgaactggttgaggttctcctgggcacagggcacagacaccatcctggccgatgagatg
ggcctggggaagacggtgcagaccatcgtgtttctctactcactctataaggagggccac
tctaaggggcccttcttggtgagtgcgcccctctccactatcatcaactgggagagggaa
tttgagatgtgggctccagatttctacgtgctgacttacacgggagacaaagacagccgg
gcagtcatcagggagaacgagttcacctttgaagacagtgcagtgaaaacaggacgcaag
gtgtttcgcatgaagaaagacactcctatcaagttccacgtgctgctgacatcctatgag
ctgatcaccatagaccaagccattctgggctccatcacgtgggcctgcctggtggtagac
gaggcccacagactgaagaacaaccaatcaaagtttttcagaattctcaacgggtataag
atctactacaagctgttgctcactgggactcctcttcagaacaacttggaagagctgttc
cacctgcttaacttcctcaccccagagcgcttcaataatctggaaggcttcctggaagag
tttgctgatatttctaaagaggaccagatcaaaaagctccacgacctgctcggccctcat
atgctcaggaggctgaaggctgatgtcttcaagaacatgcccgcaaagacagagctgatt
gtcagagtggagctcagccctatgcagaagaaatattacaagtttattttgacgcggaat
tttgaggctttgaactccaaaggtggagggaaccaagtgtccctgctcaacattatgatg
gacctgaagaagtgctgcaaccatccctacctgttccccgtggctgctgtggaagctcct
gtattacccaacggctcgtatgatggcaaccaactggtgaaatcctcaggaaaactgacg
ctgcttcagaaaatgctgaagaaactcaaagatgaaggacacagagttctcattttctct
cagatgacaaagatgttggatctgcttgaagattttttggagtttgagggttataagtat
gaacgtatcgatggaggaattactggaggcctgaggcaggaggccattgaccgcttcaat
gcgccgggcgctcagcagttttgcttcttgctttcaacacgagctggaggtcttggcatc
aacctcgcgagtgcagatactgtcataatctacgactctgactggaatcctcacaatgac
atccaagcttttagcagagcccatcgtataggccaaaataggaaggtgatgatctaccgt
tttgtgacgcgaggctcagtggaggagcgaatcactcaggtggcaaagaggaagatgatg
ctgacccacctggtggtccggcccgggctgggctccaaaaccggctccatgtccaaacaa
gaactggacgatatcctcaagtttggcactgaggagctttttaaagatgaaatggaagca
gcacgagccatgggtgacaacaaagaaggcgaggagggcaacgtgattcactatgacgac
gacgcaatctcgaagctgttggaccgcagccaggacgccactgaagacacagagattcag
aacatgaacgagtacctgagctccttcaaggtggctcagtatgtggtgaaagaagaggat
ggagaggaggaggtggagcgggagatcatcaagcaggaggagaatgtggatccagactac
tgggaaaagctccttcgccaccactacgagcagcagcaggaggatctggcccgcaacctc
ggcaaaggcaaacgcatccgaaagcaggtcaactacaacgatacgacccaagaggaccaa
gagtggcaggatgatctttcagacaatcagtcggagtactctgtggggtccgaggatgag
gacgaagatttcgaggagaggcctgaaggtggacgcagacagtctcgtcggcagatgaag
aatgagaaggacaaacctctgccccccttactggcacgagttgggggtagtattgaggtt
ctggggttcaacgctcgccagaggaaagccttcctcaatgccatcatgcgctggggcatg
ccccctcaggatgctttcaactcccattggctggttcgagacctgagagggaagagtgag
cgtgagttcagggcctacgtgtctctgttcatgagacatctatgtgagccaggggcagac
ggagcagagacctttgctgacggggtcccacgggagggactgtctcgtcagcatgttctc
accaggatcggagtcatgtcccttgtcaggaaaaaggtgcaagagtttgagcatgtaaac
ggaaagctgagttctccggatctgattcccatcggcatggagctaaagaaactgactgag
agtttatcttctgatcccaacacccccgtgccagccagccctgttgctacgcagcctggc
actcccgtccccccagagaagaacgagtctctcttgggtaccgctgaagacaaggagacc
acagagcaagatagcaagaaactgtcagagcaggaatcttccagtgcagagccagcatct
gtacctgagaaggcagctgacagcgaggagagcaaggccagctcagaggagaaaaccgga
gacgagagagacagaaccgagtcaccctccaaaaaagagccatctgtaaacccaaaagag
tctgctctgaagctgtcagagctatcatccactcaaacctcacctaaaatggagctctgc
aaagatacagaaaagtcctcagaaaaaggagatacggattctcctctggcaaaaactgaa
gacaaggaaaataagccagctgttgcagatgatatgaagaatgaagacgcgtcggagggc
cgtttgaatggagacaaagacaatttggaggacatggaggagagcaggaaagaggacaaa
aatggatacaaagtcaagttcatgtttaatatcgctgatggaggtttcacagagttgcac
accctctggcaaactgaagagcgggcggcgctgtcttctggaaagatgcacgacatctgg
caccgtcgccatgactactggcttctagctggcatcgttactcatggctatgctcgttgg
caggacattcagaatgacccacgctacgccattctgaacgagcccttcaagactgagatg
cataagggcaactacctagagatgaagaacaagttcctggctcgccgctttaagttgttg
gagcaggctctggtgattgaagagcagttgaggcgggcagcctacctgaatatgacccag
gacccgagtcacccggccatggctctcaacactcgcttcactgaggtggaatgtctggca
gagtcccaccagcacctgtccaaagagtccctggccgggaacaagcctgccaatgctgtg
ctgcacaaagtgctgaaccagctggaggaacttctaagtgatatgaaagcggatgtgacg
cggctgcccaacatgctgtccaggataccgccggtgtcggcccgtctgcagatgtccgag
aggagcatcctgagccgcctcaccagccgagggagcgagcctccaccacagcagcctttt
agccagggtgggttcggctgctcccagatgtacagcagcagctttggtggaggattcaga
ggaccgggtggacagcccatggtcaactacagccagatgcctctgggaccctacgtcagc
gtgtcctcgaatggccccccaccccctacaagccatctggacaagaagtcacttgactcc
ttgagagacgtggccacgcctgacctcaagtcgggcaaacctagtgatgtcatctgtatt
gaggactag
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integrated database retrieval system
