Etheostoma cragini (Arkansas darter): 117942906
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Entry
117942906 CDS
T07493
Symbol
hcfc1a
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1a
KO
K14966
host cell factor 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03083
Polycomb repressive complex
ecra04980
Cobalamin transport and metabolism
ecra05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
117942906 (hcfc1a)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
117942906 (hcfc1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117942906 (hcfc1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ecra01009
]
117942906 (hcfc1a)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117942906 (hcfc1a)
03029 Mitochondrial biogenesis [BR:
ecra03029
]
117942906 (hcfc1a)
Protein phosphatases and associated proteins [BR:
ecra01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117942906 (hcfc1a)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
117942906 (hcfc1a)
HMT complexes
COMPASS/SET1 complex
117942906 (hcfc1a)
MLL-HCF complex
117942906 (hcfc1a)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
117942906 (hcfc1a)
Mitochondrial biogenesis [BR:
ecra03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
117942906 (hcfc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
117942906
NCBI-ProteinID:
XP_034724586
LinkDB
All DBs
Position
4:5891155..5903434
Genome browser
AA seq
1778 aa
AA seq
DB search
MSAPGSAVSGTMASVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKNPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGVLPPPRESHTAVVYTEKTSRKSRLIIYGGMSGCRLGDLWTLDIDT
LTWNKPSVSGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMCWETVLMDTLEDNIPRARAGHCAVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPARVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPATPASPAMSATPVQPV
NSPKSPSPAAALSAQSLPQTAILKVAAQQSATGTSVVTVRPSQPGKSPVTVTSLPPGVRM
VVPAQTTQGSPIGSSPQMSGMAALAAAAAATQKIPPSAGTVLNVPAGATILKTVAVSPGT
TTMKMASPVMVSNPATRMLKTAAAQVGTATASSPTNTRPIITVHKSGAVTVAQQAQVVTT
VVGGVTKTITLVKSPLTMGSSGTLISNLGKMMSVVQTKPVQTSAITGQASTNPLTQIIQT
KGPLPAGTILKLVTSADGKPTTIITTSQAGGTGNKPTILNISGVSPSTTKQGTTIIKTIP
MSAIMTQPGATGVTSSAGMKTPITILTTKVMTTGTPGKIITAVPKLGTSAGQQGLTQVVL
KGAPGQPGTILRTVPMSTVGGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSS
SLGGGTVDSSNASLVTPITTLGTIATLSSQVISPSAITVSTAQTSLTSASALPSSTMTVQ
NHPTQVTLITTPSGVEAQPVQDLPVSILASPTSEQPSSTEAGSAGEGSGTVTLVCSNPPC
ETHETGTTNTATTSSAAIGAGQVCSNPPCETHETGTTNTATTASSNMSAPRICSNPPCET
HETGTTNTATTASANMGSDQASTATDQVKTVCSNPPYETHETGTTNTATQLSSNMNAGQS
STLQRLCSNAPCETHKTGTTNTQSTASSNMGSDQTCTSSGQVQTVCSNSPCETNETGTTN
TQSTASSNMGSDQTSTATGQVQTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTA
SSSMGSDQTSTATGQVQTACSNPPCETHETGTTNTATTATCSMETGEGTAAQQTEEGAEG
TSSTEVASTAATGNVTTPQGRAITTVTQSTPAPGPSVPSISSITEGESPSSTEEPMQTDE
TASAEAAPAVEGATAMQTQVEGEAATATALNLPSELMSEGQGATLMVTGLSDEELAVTAA
AEAAAQAAATEEAQALAIQAVLQAAQQAVMHEGNSTGESPQTTNIPIMLTQQELAALVQQ
QQQLQEAQAAAQQAAMDTSLPTEGLAPADSLNDPSVESNGHNEMAAAVTSAVASLLPRTT
AETLAPSSTFAPSVSVASPAKLQAATALAEVANGIEGEKQAPQPTPVKPVVKKENQWFDV
GIVKVTNMVVTHFYMPGDDSHGDDDSGIMPDYSQMKKMELQPGTAYKFRVAGINACGRGS
FSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSNQTAE
AKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQV
RWLQESGKDAASAKPAPKRPGTSPDTKATGPKKARTDQ
NT seq
5337 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcccctggctccgcggtgtctgggaccatggcgtcggttctgcagccgcggtgg
aaacgggtgctgggatggtccggtcccgttccccggcccaggcatggacatagagctgta
gctataaaggagcttatggttgtctttggcggtggaaacgaagggattgtggacgaatta
catgtatacaacactgcaacaaaccagtggtttatcccagcagtccgtggtgatattccc
cctggttgtgctgcatatggttttgtctgtgatggcacaagattgctggtatttggtggc
atggtggagtatggaaagtacagcaacgatctctatgaactacaggccagcagatgggaa
tggaaaaagttgaaagcaaaaaacccgaagaatggcccccctccttgccctcgtcttggc
cacagtttttccctggttggcaacaaatgctatctgtttggtggactagccaatgacagc
gaggacccaaaaaacaacattcccagatacctaaatgatctgtacactcttgagctccgt
gcgggttccagtgtggttggatgggatattccaattacatatggagttctgcctcctccc
cgtgagagtcacactgctgtggtatacacagaaaagacgagcaggaaatctcgcctcata
atctatggagggatgagcggttgccgccttggagatctgtggacacttgatattgatacc
ctgacatggaacaaaccatcagtaagtgggacagcaccgctccccagaagtctgcactct
gccactaccatcacaaacaagatgtatgtttttggaggatgggttccattggtaatggat
gatgtcaaagtggccacacacgagaaggagtggaagtgcacaaacactcttgcctgctta
aatctagactccatgtgttgggagacagtattgatggatactcttgaagacaacatccct
agggcccgtgctggccactgtgctgtagccatcaattccagactctatgtttggagtggc
cgtgacggttatcgtaaagcttggaacaaccaagtctgctgtaaagacctctggtacctc
gaaacagagcgtccacacgcccctgctagggtgcagttagtccgtgccaacacaaactct
cttgaggtgagctggggcgctgtctcaactgctgacacctacttactacagctgcagaaa
tatgacatccctgccaccccagcctcgcccgccatgagtgccacccctgtgcagcctgtg
aactctccaaagagcccctcaccggctgcagcactctctgctcagagcctaccccagaca
gcaatcttgaaagttgcagctcaacagtctgccacgggcacatctgttgtcacagtccgc
cccagccagcctgggaaatcccctgtcaccgtgacatcccttccgccaggtgtccgaatg
gtagtgcctgcccagactacccaaggatcgccaattgggagcagccctcagatgagtggc
atggcagctttagctgcagcagctgccgcaacacagaagatcccgccctctgcaggcact
gtcctcaatgttcctgcaggtgccaccattctcaaaacagtggccgtttcacctggcaca
accacaatgaaaatggcttcaccagtcatggtcagtaacccagccacccggatgctgaaa
actgctgcagcccaggtgggcacagcaactgcgtcctctcccaccaacaccagacccatc
atcactgtgcacaagtcgggtgcagttacagtggcccagcaggcccaagtggtaaccact
gtggtaggaggagtcaccaagacaattaccctggtcaagagtcctctcaccatgggcagc
agtggcactctgatctccaaccttggcaagatgatgtctgtggtacaaaccaagccagtg
cagacatcagctatcacaggccaggcttccactaaccctctcacacagatcatacagaca
aagggtccccttccagccggcaccatcctgaaactagtgacctccgcagatggcaaaccc
acaaccatcatcaccacttcccaggcaggaggcacaggaaacaagcccactatactaaac
atcagcggtgtctctccatccaccactaagcagggcaccaccatcataaagaccatccct
atgtcggccatcatgacccagcctggagccacaggtgtgacaagcagtgcaggcatgaaa
acgcctatcacaatccttaccacaaaggtgatgaccactggaactcctggtaaaatcatc
actgcagtgcccaaacttggcacttcagctggccaacagggactgacacaggtggttttg
aagggtgctcctgggcaacctggcactattttgcgcactgtgcccatgagcacagttggc
ggtgttcgacttgttacaccagtgacagtgtctgctgttaagcccactgttaccactctg
gttgtcaaggggactactggtgttaccacacttgggactgtcactggtacagtctcctca
agcctgggaggaggcacggtggacagttccaacgcctctctggtcacccccatcaccaca
ctaggaaccatcgctaccctgtctagtcaggtcattagcccatctgccataactgtatca
actgctcaaaccagcttgacttctgcctcggcgttgccctcctctacaatgacagtacaa
aaccatcccacccaggttactctgatcacaactcccagtggtgtagaagctcagccagtg
caggatttaccagtgtccattctggcttcaccaacctctgagcagcccagctccactgag
gctggatccgctggagagggctctgggaccgtcaccctggtctgttccaacccgccctgc
gagacccacgagacaggaaccaccaacacagccaccacctcatctgctgcaattggagca
ggacaggtgtgctccaacccgccatgtgaaacacatgaaacggggacaaccaacacagcc
acaactgcatcatctaacatgtctgcaccgcgcatatgctccaacccaccatgcgagacc
catgaaaccgggacaactaacacagctaccacagcatcggctaacatgggaagcgaccag
gccagcacagcgacggaccaggtcaagacagtttgctccaacccaccctatgagacccac
gagaccgggaccaccaacacagccacccaattgtcatctaacatgaatgcaggccagtca
agcaccctgcagaggttgtgctccaacgcgccctgcgaaacacacaaaactgggaccacc
aacacccagtccacagcctcatccaacatgggaagcgaccagacctgcacatcttcaggc
caggtccagactgtttgctccaactcaccctgtgaaacaaatgaaactgggaccaccaac
acccagtccacagcctcatccaacatgggaagcgaccagaccagcacagcaacaggccag
gtccagacggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntacagcc
tcatccagcatgggaagcgaccagaccagcacagcgacaggccaggtccagacagcttgc
tccaacccaccctgtgaaacacacgaaactgggaccaccaacacagccaccactgccacc
tgcagcatggagacaggcgaaggcacagcagcccagcagacagaggagggagcagaaggt
accagcagcacagaagtggcctctactgcagcaacgggcaatgttaccaccccccagggc
agggccatcactactgtcactcagtctacaccagcccctggaccatctgtaccttcgatc
tcatcaatcacagagggtgagagtcccagctccacagaggaacctatgcaaactgatgag
actgcatcggcagaagctgcacctgcagtggagggagccaccgctatgcagacacaagtg
gagggagaagcagcaacagctacagcattgaatcttccctcagagctgatgtctgagggt
cagggcgccacactcatggtgacagggctgtcggatgaggagctggctgtgactgcagcg
gcagaagccgctgctcaggcagcagccactgaagaagcccaggccctcgctatccaggct
gtcctccaggcagctcagcaagctgtaatgcatgagggcaattccactggagagagcccg
caaaccaccaacatccctatcatgttgacccagcaggaacttgcagcattggtccaacag
cagcagcagctgcaggaggctcaggctgcggcacagcaggccgccatggacacaagcttg
cctactgaaggcctcgcccctgctgacagcctcaacgacccctctgtcgagagcaacgga
cacaatgagatggctgccgctgtcaccagtgctgtggcatcactgctgccacgtactact
gctgagacacttgctccatcaagcacatttgccccctctgtttcagtggcaagtccagcc
aaactgcaagcagccactgctctagcagaggttgccaatgggatcgagggagaaaagcaa
gcccctcagccaaccccagtgaagcctgttgtaaaaaaagagaatcagtggtttgatgtt
ggaattgttaaagtgacaaatatggttgtcacccacttctatatgccaggagatgattct
cacggagatgatgactctggcatcatgccagactacagccagatgaagaaaatggagctg
cagcctggaacagcttacaagttccgtgttgctggaatcaacgcttgtggtcgtggatct
ttctccgagatatctgctttcaagacctgcctgccaggctttccaggggcaccttgcgcc
atcaaaatcagcaagagcccagatggtgcccacctgacctgggagccaccctcagtgacg
tccgggaagatcattgagtactctgtgtacttggccatccagagcaaccagacagctgaa
gccaaggcctccaccccagcacagctagccttcatgcgggtgtactgtggacccaacccc
tcttgcttggtgcagtcgtccagcctctctaacgctcacattgactacaccaccaagcca
gccatcatcttccgcatcgccgcccgcaatgagaagggctatggtcccgccacccaagtt
cgatggctgcaagaatctggcaaagatgccgcctctgcaaaaccagcccccaaaagacca
ggcacctctcctgatactaaggctactggtccaaagaaagcaaggacggaccagtga
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integrated database retrieval system
