Etheostoma cragini (Arkansas darter): 117942994
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Entry
117942994 CDS
T07493
Symbol
wdr82
Name
(RefSeq) WD repeat-containing protein 82
KO
K14962
COMPASS component SWD2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117942994 (wdr82)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117942994 (wdr82)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117942994 (wdr82)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117942994 (wdr82)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
117942994 (wdr82)
COMPASS/SET1 complex (yeast)
117942994 (wdr82)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
NBCH_WD40
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
VPS8_N
MinC_C
Motif
Other DBs
NCBI-GeneID:
117942994
NCBI-ProteinID:
XP_034724737
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Position
4:complement(16789059..16793173)
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AA seq
313 aa
AA seq
DB search
MKLTDNVLRSFRVAKVFRENSDKINCFDFSSNGETIISSSDDDSLVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHNKRVTSLSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGINSEMVKLYDLRSFD
KGPFATFKLQYDRTCEWTGLKFSNDGKLILLSTNGGALRVLDAFKGAVLHSFGGYNNNKC
VTLEASFTPDSQFVMIGSEDGKIHVWNAESGMKVALLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacggacaatgtgctgcggagctttagagttgctaaggtgtttcgagaaaac
tcagacaaaattaactgtttcgatttcagttcaaatggagaaacaattatttccagcagc
gacgacgattccttagtcttgtacgactgccaagagggaaaacccaagaggactctctac
agcaaaaagtatggagtggatctgatcaggtacacacatgctgcaaacactgtggtctac
agttccaacaaaatcgatgatactatccggtacctgtcccttcacgacaacaaatacatc
cgctactttcctgggcataacaaaagagtgacgtccctctccatgtctcctgtggatgac
acatttatatctggctcattagataaaacaatcagactgtgggatttgcggtcgcctaac
tgtcagggtttgatgcacctgcaggggaagccggtgtgctcttttgatccagagggtcta
atattcgctgcaggaattaattcagagatggttaaactttatgatctgcggtcgtttgac
aagggtccttttgcaaccttcaagcttcagtatgaccggacgtgtgagtggacaggactc
aagtttagcaatgatggaaaactcattcttctttctactaatggtggagcccttcgtgtc
ttagatgcttttaagggtgccgtgttacattcctttgggggttacaacaacaataaatgt
gtaacactggaggcatcgttcaccccggattctcagtttgttatgatcggctctgaagat
ggaaaaatccatgtgtggaatgcagagagcggtatgaaggtggctttattagacgggaag
cacacaggaccaattacctgcctgcagttcaaccccaagttcatgacgtttgcaagtgcc
tgctccaacatggcattctggctcccgaccatcgatgactga
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