Etheostoma cragini (Arkansas darter): 117943060
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Entry
117943060 CDS
T07493
Name
(RefSeq) laminin subunit beta-3-like
KO
K06244
laminin, beta 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04382
Cornified envelope formation
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117943060
04518 Integrin signaling
117943060
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117943060
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117943060
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMB1
CCDC171
CCDC39
DUF8042
CLIP1
DUF1664
CEP135_TSGA10_CC
F5_F8_type_C
DUF5847
ATG17_like
Tropomyosin
Motif
Other DBs
NCBI-GeneID:
117943060
NCBI-ProteinID:
XP_034724846
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All DBs
Position
4:complement(23981358..24006319)
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AA seq
1164 aa
AA seq
DB search
MRTLLLLAAIAAVSQAQTDCSQGACYPPISDLLLGRGQQLHASSTCGLAGSEVYCTPYEQ
RRMKCCPCDSRNPYGQLAHTVQDVLSTSGPDRWWQSVKEVNYVTLQLDLGSLFQLDNLVL
DFKGPRPSSFLIERTQDNGRTWEPSLYLATDCHKSFPGIPTTTPLTLDQTYCFTLPPTGA
NAYQDHKIQFDPLRQYAYVPASKNQKIEDVSAVTGLRVRLMELGDVPRLPGRALSRFYAL
KEMRVMGRCMCHGHANRCLPEADNNLLTNSIQVNPQCDCQHNTVGDNCERCADLYNDLPW
RPAEEGNTHTCKRCECNNHAQRCRFDQSVFEASGRRSGGVCEGCLHHTTGPKCDQCAPGY
QPNPRSRMDRPDACIRCVCSAEGTVNGGRCDDSSGACQCKVNVEGPRCERCKRGYYDLSA
SNPLGCSKCSCSPDGSLSDDCDVISGQCACRTHFHGRTCEVCSKGYWKPALTSFCKPCGC
DPTRSYSDTCDQVTGQCQCRPGFGGPTCSECPDNTYGDPLTGCRLCRCDAEGTLPGGCDK
QTGACLCRPGVTGTRCDSCSRGHCDSFPGCKTCPSCFFTLDAQRQNLSAALERLSPRFPS
RPGGAGDPGNFVPRILILENSLNLIRDSISLPLGITTQVDKALLQLDKLRNQVDRVNSDL
PPLTPTPGLDSELDRLQALLDSLSLVYKAKKDAKDNFSNQNNAGAFSAIKTAYDESTDAA
KNVNASGDVVKESADARGETKDLQNQVQPANTRDLDKLNQSMASRPDLTPVAKQVCGSVR
SEPCTPLQCEGGALCPPDRTPPCAKGEKCVGALPLSKRADADVKDVKERLDKLTGKITEA
AEKLQETQDATNQVRESAEKLSNRMKQAQDELEVDLKETRDVVKDLKDFLSDPSSNLTHI
QEVSDWILKAKLPLSLAALKRKLEDLKNLAANLPDSTAVLNQAEPQLEKARKLLQEAQDA
RDTALGVKADVDGLLEGFSSVEGSLSDLEDKLQDSMDLIDNVSNSLTKVKEQLIPAEKAL
DDASALIKPMKPQLDKLNNLLQNGGQQAQDAQDNADKAEDEAAAANEDLLSLEKQLELLK
EKDVASEGAGPLGDRLVKLQQDAGALANTTDNMMEALEGKADSIKGLQDEILVKSKLLEG
LDAKLKDILGKLRKKAQDLSTCQG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgagaacacttttactcctagcagccatagctgcagtctcccaggcccagaccgactgc
tctcagggggcttgttacccacccataagtgacctgctcctgggaaggggccagcagctc
cacgcctcctccacctgtggcctcgctggttccgaggtctactgcaccccatacgaacag
aggaggatgaagtgttgtccatgtgactccaggaacccatacggtcagctggcccacact
gtccaggatgtcctgtccacatctggaccagacagatggtggcagtcagtgaaagaggtg
aattatgtcactctccagttggacctgggcagcctgttccagttggacaacctggtgctc
gacttcaagggtccgcgtcccagttcctttcttatagagaggacacaggataatggcagg
acgtgggagccctctctctacttggctacagactgtcacaagtctttccctggcatcccc
acaactacgcctctcaccctggaccagacgtactgcttcacactgccccccactggagcc
aacgcataccaagatcacaaaatccagtttgatcctttgcgtcagtatgcttacgtgcct
gcttccaaaaaccaaaagattgaagatgtgtctgcggtgacggggctgagggtgagactg
atggagctcggcgacgtgccgcgtctgccaggcagagcgctcagtaggttctacgccctg
aaggagatgagggtgatgggccgctgtatgtgccacggacacgccaaccgatgcctgcca
gaggccgacaacaacctgctgaccaacagcatacaggtgaatcctcagtgtgactgccag
cacaacacagtcggagacaactgtgagcgttgtgctgatctctacaacgacctgccctgg
agacctgcagaggagggcaacactcacacctgcaaacgctgtgagtgtaacaaccacgcc
cagcgctgtcggtttgaccagtcggtgttcgaggccagtgggcggaggagtggaggtgtg
tgtgagggttgcctgcaccacaccacagggccaaagtgtgaccagtgtgccccgggctac
cagccaaaccctcgcagccgaatggaccgccccgatgcctgcatacgctgtgtctgcagt
gccgaggggacagtaaacgggggccggtgtgacgacagcagcggcgcgtgtcagtgtaag
gtgaacgtggaaggcccccgctgtgagcgctgtaagagaggctactacgacctgagcgcc
tccaaccctctgggctgctccaagtgttcctgttccccagacgggtccctgtcagatgac
tgtgacgtgatcagcggccagtgtgcctgtcggacccacttccacggtcggacctgtgaa
gtgtgttccaaaggctactggaaaccagcgctgacttcattctgcaaaccctgcggctgt
gaccccaccaggtcatacagtgatacttgtgaccaggtgacaggtcagtgtcagtgcaga
cccggctttggaggcccaacatgtagcgagtgcccagacaacacatacggagaccccctc
acaggctgccgattgtgtcgctgtgatgctgaaggaacacttccaggcggttgtgacaag
cagacgggggcctgtttgtgtcggcccggcgtcacaggaacccgctgtgactcctgcagc
cgaggacactgtgactccttccctggctgcaagacatgtccgtcctgcttcttcaccctg
gacgcccagagacagaacctcagtgcagctctggagagactctcccccagatttccttcc
cgtcctggaggggctggtgatcctggaaattttgtacctcgcatcctcatcctggagaac
agcctgaacctgatccgggactccatctccctccccctcggtattaccacacaggtcgat
aaggctctgctccaactggacaagctcaggaaccaggtggacagggttaacagtgacctt
ccacccctgacaccaactcctggtctggactcggagcttgacagactccaggctctcctg
gacagcctcagtctggtgtacaaagccaagaaagatgcaaaggacaactttagcaatcag
aacaacgcaggagcattttctgccatcaagaccgcgtacgacgagtccacagacgcagcg
aagaatgtaaacgccagcggagatgtggtgaaggagtcagctgatgccaggggagagacc
aaggaccttcaaaaccaagtccagccagccaacaccagagacctggacaaactgaaccag
agcatggcctcccgacccgacctcacgcctgttgccaaacaggtatgtggcagtgttcgc
tcagagccctgcacccctctccagtgtgagggtggagcgttgtgcccccccgacagaacc
ccaccttgtgcaaagggggagaaatgtgtgggcgccctgcctctgagcaagagggcagac
gccgatgttaaggatgtgaaagagcgactagacaagctgactgggaagatcacagaggca
gcagagaagctccaggaaacacaggatgcaaccaatcaggtgagagagtccgcagagaag
ctgtccaataggatgaagcaggcccaagacgagctagaagtcgacttgaaagagacgcgt
gacgtcgtgaaagacctcaaagatttcctgtcagacccgtcctccaacctgacccacatc
caggaggtgagcgactggatcctgaaagccaaactgcctctcagcctggccgctctgaag
aggaagctggaggatctgaagaatctagcggccaatctcccagacagcacggccgtgttg
aatcaggccgagccgcagctggaaaaagccaggaaactgctgcaggaagcgcaggacgcc
agggatacggccctgggagtaaaggccgacgtggacgggttgctggaaggcttcagctca
gtggagggctccctctcggacctggaggacaaactgcaggacagcatggatctcatagac
aacgtgagcaacagcctgacaaaggtcaaagagcagctgatcccagcggagaaggctctg
gatgatgcatcggcactcataaagccaatgaagccccaactggacaagctcaataatctg
ctgcagaacggaggccagcaggcccaggatgcacaggacaacgcagacaaagctgaggat
gaagcagctgctgccaatgaggacttgttgtctctggagaagcagctagagcttcttaaa
gagaaggacgtggccagtgaaggggcggggccgctgggggaccgactggtgaagctgcag
caggacgccggagcgcttgccaacaccactgacaacatgatggaggctctggaaggtaaa
gcagattccatcaaggggctgcaggacgagatcttagtgaagtccaaactgcttgaagga
cttgatgctaagcttaaggacattttgggaaaacttcgaaagaaagcccaggacctcagc
acctgccagggctga
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