Etheostoma cragini (Arkansas darter): 117943108
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Entry
117943108 CDS
T07493
Symbol
sdc4
Name
(RefSeq) syndecan-4
KO
K16338
syndecan 4
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04512
ECM-receptor interaction
ecra04514
Cell adhesion molecule (CAM) interaction
ecra04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117943108 (sdc4)
04514 Cell adhesion molecule (CAM) interaction
117943108 (sdc4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117943108 (sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecra00535
]
117943108 (sdc4)
Proteoglycans [BR:
ecra00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
117943108 (sdc4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
117943108
NCBI-ProteinID:
XP_034724927
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All DBs
Position
4:complement(150437..169619)
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AA seq
227 aa
AA seq
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MLSLCLVLILSTSVFSESARETETWVPMKTTQTVAMSTRHGDLESSGASENGSDFGFTDA
EEDEDTDEDSDYYTETLYDDEDEYDGFSGSGDGATTVSPVTESEPSAKADVDDDNNDLPE
AERPARPTVDQLDVVRQSNEIPRLSNEAPPPGEDQPSNVLMAHAAEDSIFNKTEVLAALI
AGGAVGLMFAVLLVLLLIYRMKKKDEGSYDLGKKPIYKKAPTTEIYA
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcctctgcctcgtgttgattttatccacctccgttttctcagagtcggcgagg
gagacggagacgtgggtgcccatgaagaccacgcagacggtcgccatgtcgacgcgacac
ggcgatctcgagtcgtcgggagcctcggagaacgggtctgacttcggcttcacggacgcc
gaggaggacgaggacacggacgaggacagcgactactacacggagacgctgtacgacgac
gaggacgagtacgacggcttctcgggatccggggacggagcaacgactgtgtctcctgta
acggagtccgagccctcagctaaggccgacgtcgacgacgacaacaacgacctcccggag
gcggagcgcccggcgcggcccaccgtcgaccagctggacgtggtgcggcagagcaacgag
atccctcggctgtccaacgaggcgccgccgcccggcgaggaccagccgtccaacgtcctc
atggcccacgccgcggaggacagcatcttcaacaagacggaggtcctcgcagctctgatc
gcgggcggcgccgtcggcctgatgttcgccgtcctcctcgtcctcctgctcatctaccgc
atgaagaagaaggacgagggcagctacgacctggggaagaaacccatctacaagaaggcc
cccaccacggagatctacgcgtag
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