Etheostoma cragini (Arkansas darter): 117943414
Help
Entry
117943414 CDS
T07493
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117943414 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117943414 (smarcc2)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117943414 (smarcc2)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117943414 (smarcc2)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117943414 (smarcc2)
PBAF complex
117943414 (smarcc2)
GBAF(ncBAF) complex
117943414 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
117943414
NCBI-ProteinID:
XP_034725419
LinkDB
All DBs
Position
4:complement(13714903..13724602)
Genome browser
AA seq
1033 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCQILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQVSLPQKINCDLQQESGSVTEDKASSSHVVVPIPTSLEEEEWVRPVMK
RDKQVLLHWGYYPDGYDTWIPASEIEAAVEDPPSPEKPRKVHAKWILDLDQYNEWMNEED
YEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPSPSPTPPPQESKKKNTK
KGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNPPKTNSTKKDSDSTPVKGGTD
MDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHHIIIPSYAAWFDYNSVH
AIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMR
VHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVPLQPKTSQTPAAQQIMS
FPDKVKEKPADLQNFGLRTDMYSKKTGSAKSKSTASSMREWTEQETLLLLEGLEMYKDDW
NKVSEHVGSRTQDECILHFLRLPIEDPYLEDNSSSLGPLAYQPVPFSQAGNPVMSTVAFL
ASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAARVSGRQDPLYGLEGSGI
AGTGLEEGDRPDESNDESKSDNQPSEEKREAKDSKDGATEEEEKQAENGKKEEERGREQE
GEREADKTESEMGDGEKEKDGKEGTEEGQRDAESEVERKAKVERDVGEGNLATAAASALA
AAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQL
LADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQGGGPHANQAAPAPPPQGPTASQQAPS
TPALQPAPSPAPPASAPAPESQPPQGAHTSPPRPPGSTPAAHSSSSTTPVLHEPSAQLPG
ETLHSSAPVPPPQ
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccctaccaacaagtctctgtctagcctggtggtccagctgctccagttccag
gaggaggtgttcggtcggcatgtcagcaaccctccgctcaccaagctgccaatgaagtgt
tttctggacttcaagtcaggaggggccctctgccaaatccttgctgctgcctataagttt
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcgaggatggaccgaaat
gtcgagatgttcatgacgattgagaagtctttagtgcaggtgagtttgcctcagaagatc
aactgtgacctccagcaggaatccggttcagtaactgaggacaaggcctccagctcccat
gttgtcgttcctattcccaccagcctggaggaagaggagtgggtgcgtcctgtaatgaag
agagataaacaagtgctgctccactggggatattatcctgacggttatgacacctggatc
ccagccagtgagattgaggctgccgtggaggatcctcccagcccagaaaaacccaggaag
gtccatgccaagtggattttagacctggaccagtataatgagtggatgaatgaggaggac
tatgaagtgggcgagggctgccctaagaggaagaggatctcagccaaaaccctgacagat
gaggtgaccacgcctgacgagcggagggacaagaagcctggcagtgccaagaagaggaag
aggtcgccgtcgccctcccctacccctccacctcaggagagcaagaagaagaacaccaaa
aaagggccaacgacgccgtacaccaagtctaaacggggccaaagggaggaggaacaggag
gatctaagtaaagacttggatgaagcatcacctgttcccgcatctgaagagggaaaccca
cctaaaacaaatagcaccaagaaggactctgattcaactccagtcaagggaggaacagat
atggacgagcaagaggatgagtccatggaaacagcaggcaaggaggaggaggaaggctct
ccaagcgtgaagggtgaaccagtgaaaggctctgaccttcacgaggacaatgtgactgag
caaactcatcacattattataccgagctacgctgcctggtttgactataacagtgttcat
gccattgagcgcagagccctgccagagtttttcaatgggaagaacaaatccaaaacccca
gagatttacctggcgtacaggaacttcatgattgacacctaccgactgaaccctcaggag
tacctgacctccaccgcctgccgcaggaacctggccggagacgtgtgtgctatcatgaga
gtccacgccttccttgagcagtggggcctgatcaactaccaggtggactccgagagccga
cccacacccatgggtcctccacccacctctcactttcacgtccttgcagacactccatcc
agtctggtacccctgcagcccaagacgtcccagacccctgctgcccagcagataatgtcc
ttcccagataaagtgaaggagaaacccgcagatctgcaaaactttggcctgcggactgac
atgtacagcaagaagactggctccgcaaagagtaagagtacagcgagctctatgagggag
tggacagaacaagaaacactactactactggaggggttggagatgtacaaggatgactgg
aacaaggtttcagaacatgtgggcagccgtacgcaggatgagtgcatcctgcacttcctg
aggctgcccattgaagacccttacttggaggacaactcctcgtcccttggaccactggcc
taccagccggtacctttcagccaggcaggaaaccctgtcatgagcacagtggccttcctc
gcctctgtcgtcgacccacgcgtggcctcggctgcagccaagtctgctctggaggagttt
tctcgtatgaaggaggaggttcctgcagcgcttgttgaggctcatgtgcggagggtggag
gaggcagcgagggtcagtggccgacaggacccgctgtatggcctggagggtagtggcatc
gcaggcactggactagaggagggagacaggcctgatgaaagcaatgatgaaagtaagagt
gacaaccaacccagtgaagagaagagggaggccaaggacagcaaagatggagcgacggag
gaagaggagaagcaagcggagaatgggaagaaggaagaagaaagaggaagagaacaagaa
ggagagagggaggcggacaaaacagagtcagagatgggtgatggggagaaggagaaggat
ggaaaagaaggcacagaggaaggacaaagggatgcagagagtgaagtagagagaaaggca
aaggtggagcgggatgtgggagaggggaacctggccactgctgctgcgtctgcactcgct
gctgctgctgtcaaagccaagcacctggctgcagtggaagagaggaagatcaaatctctt
gtggctctgctggtagagacccaaatgaagaagctggagattaaactgcgacactttgaa
gaactggaaaccatcatggacagagagagggaggctttggagtaccaacgtcagcagctg
ctggctgaccgtcagtccttccacatggagcagttgaaatacgccgagatgagagcccgc
cagcagcacttccagcagatccagcaccagcagcacagccagggcgggggccctcatgcc
aaccaggctgctccagccccgccaccccagggtccgaccgcaagtcagcaagcgcccagc
acaccagcgctgcagccggcccccagtcctgcacctccagcctctgcccccgcccctgag
tcccaaccacctcagggtgctcacacctcgcccccccgccccccaggctcaacccccgct
gcccactccagctccagcactactcctgtacttcatgagcccagcgcccaacttcccggg
gaaacactccactcctcagctccagtcccacccccacagtga
DBGET
integrated database retrieval system
