Etheostoma cragini (Arkansas darter): 117943466
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Entry
117943466 CDS
T07493
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117943466 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117943466 (smarcd1)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117943466 (smarcd1)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117943466 (smarcd1)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117943466 (smarcd1)
PBAF complex
117943466 (smarcd1)
GBAF(ncBAF) complex
117943466 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
117943466
NCBI-ProteinID:
XP_034725509
LinkDB
All DBs
Position
4:20881834..20902214
Genome browser
AA seq
514 aa
AA seq
DB search
MAARGGFQSAPTGGGGGAMGPGPPVPGAGPGMGPGTPSGRMVPSSAAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGNSPVSRPVMPGVMDPSRKRPAPQQIQQVQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEF
YYQPWAQEAVCRYFYSKVQQRRQELETALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggggggtttcagtcggcaccgacgggaggtggtggtggagcaatggga
cctggaccaccggtaccgggcgcaggaccaggcatgggccccgggactccttctggaagg
atggtaccgtcgtcggccgcgcagaaccacatgtaccgctccccgatgcctgggcccggg
tacccgagaccaggcatgcctccatccagccgcatgaccccacagggaccagccatgggc
cccccaggatatggcaacagcccagtgtctcgccctgtaatgcctggtgtgatggacccg
tctcgcaagaggcccgcaccccaacagatccagcaggttcagcagcagaaccgcaaccag
cacacaaagaagaagaagatggctgataaaattctacctcagaggatcagggaactggtc
ccagagtctcaggcttacatggatctgctggcttttgagagaaagctggatcagaccatc
atgcgcaagaggctggacattcaggaggctctcaagaggcccattaagcaaaagagaaag
ctccggatctttatatcaaacaccttcaaccctgcaaagccagatgcagaggatggagaa
ggcacagttgcatcatgggagctacgtgttgagggacgtctgctggaagatacggctgtg
tccaagtatgaagccaccaaacagaagaggaagttctcctctttcttcaagtctctggtg
attgaattggacaaagacctgtatggtccagataatcaccttgtggaatggcacaggact
gccaccacacaggagactgatggttttcaggtgaagaggcctggtgatgtgggtgttcgc
tgcaccgtcctgctcatgcttgactaccagccccctcagttcaagctggacccccggctg
gctcgtatgctaggtatccacacccagactagaccggtcatcattcaggccctgtggcag
tacgtcaagacccacaaactccaagaccctcatgagcgcgagttcatcaactgtgacaaa
tatctgcagcagatctttgagactcagcggatgaagttctccgagatcccgcagcgcttg
catgctctcctgatgccccctgaaccaatcatcatcaaccatgtgatcagtgtggaccct
aatgaccaaaagaagacagcttgttatgacattgacgtggaggtggatgacacgctaaag
acccaaatgaactctttcctgctctccacagccagtcagcaggaaatagcaggactggac
aacaagatccatgaaaccattgagaccattaaccagctgaagacccagagagagttcatg
ttgagttttgccagagatcctcagggctttatcaatgactggcttcagtcccagtgcaga
gacctcaagaccatgacagatgtggtaggaaacccagaagaagagcgaagagcagagttt
tactaccagccgtgggctcaggaggccgtctgccgctacttctactccaaggtccagcag
aggcgacaggagcttgagacggcactcggcatcaggaacacctag
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