Etheostoma cragini (Arkansas darter): 117943514
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Entry
117943514 CDS
T07493
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117943514 (pdzrn3b)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117943514 (pdzrn3b)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117943514 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
PDZ_Tricorn
Sina_ZnF
zf-TRAF
zf-rbx1
U-box
zf-RING_6
IBR_1
RING_XB3-XBAT31
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
117943514
NCBI-ProteinID:
XP_034725570
LinkDB
All DBs
Position
4:4693747..4786104
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AA seq
1047 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCDYSPEKCRNKGCNEVL
SLRDMDAHMRETCDYRPVGMCESGCGLMLTRREQILNSHCCMRALKAHNSALHCKMISLD
REFKKQTIKANKREKSLLAQLSAVHTELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
ETLCLTVVLLREDGSLGFNIIGGRPCADDNDSTSNEGIFVSKIIEEGPADKEEGLQIHDR
ILEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPRPKVVSPASDTQVSDISTQTDIT
LQHIMALTKLSPPSPPMTELEEYLLPEEHPPHAYFDPNDFLEVMQQDIEREELEYEEVDL
YRANIQEKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNRE
DAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASR
LQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDHTTNTLGSCR
KLTYSQDTLGSTDLPFSSESFISADYTDTDFLGIPVDECERFRELLELKCQMQSGGAQGL
YYQGGGAGGQDQECVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHNSGF
RNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGAENQ
GPAGASSSASSNGKTLKPLLSPVQEACGPSRSRGSSKDPDGALQAESKERKSGESSKSGR
SFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDAISPSYLEPKM
EWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEERK
QHAVRAKEQRQRREFMKQSRADCLKEQPGPEDKKEPNIIELSHKKMMKKRSKKIFDNWMT
IQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggattttaaatgcaacttg
tgcaataaagtcctggaagacccgctgacgactccgtgcggtcacgtcttctgctcaggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgtcagcggatctca
accaaagagctgaaccacgtcctgcctttgaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgatgcggtggtgaagctgcagcatctggccgagcac
gccgagatgtgcgactactccccggagaagtgcaggaataaaggatgcaacgaggtgctt
agcctccgggacatggatgctcatatgcgggagacttgcgactacagaccggtggggatg
tgcgagagcggttgcggattgatgctcactcgtagagagcagatattaaacagccactgc
tgtatgagagccctgaaggcgcacaacagcgcgctgcactgcaaaatgatcagcctggat
agagagttcaagaagcagactattaaagccaacaagagagagaagtcactcctggcacaa
ctttccgccgtgcacaccgagctgcaaatgacagctctgaaatatcagaagaaattcaca
gagtacagcgagaggatcgattccctaaccaagaccgtggctttctcctgcaaggaaggc
gagactttatgcttgacggttgtccttcttcgtgaggacggatctctgggttttaacatc
ataggaggaaggccatgcgcggacgacaatgacagcacttccaatgaaggaatctttgta
tccaagatcatcgaggaaggtccggcggacaaggaagaagggcttcaaatccacgacaga
atactagaggtcaatggcaaggacctgtccaaggccacccacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcatggtccaggttctgcgccgtgccccacgtcccaaa
gtggtcagcccggctagtgacacccaggtctcagacatcagcacccagaccgacatcacc
ctccagcacatcatggccctcaccaagctgtctcccccttcaccccccatgacggagctg
gaggagtatctacttccagaggagcatcctccacatgcatactttgaccccaatgacttc
ctggaggtgatgcagcaggacatagagcgtgaggagcttgaatatgaggaagtggatttg
taccgggccaatatccaagagaagctgggcctgacaatctgctacaggactgatgatgag
gatgaggctgggatctacattagtgagattgatccaaacagcattgctgccaaggatggc
agaattagagaaggggacaaaatcattcagatcaatggtgttgagatccagaaccgggaa
gatgctgtagcgctgctgaccagtgaggggaaccagaatatctctctgctggtggccaga
ccagagatccagctggacgagggctggatggatgatgataggaacgacttcctggatgac
ctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagcaga
ctgcagcagaagaagcacgaggaggatggaggcaccacagacacagccacgttgctgtcc
aaccaccacgagaaggacagcggggtgggccgcacagacgagagtacacgaaacgacgag
agctcggagcaagagaacctcggggacgaccacaccaccaacacgctgggcagctgcaga
aagctcacctacagccaggacaccctcggcagcaccgacctgcccttcagcagcgagtcg
ttcatctccgccgactacactgacactgacttcctgggcatcccggtggatgagtgcgag
cgctttagagaactcctggaactgaagtgccagatgcagagcggtggagcccagggtcta
tactaccagggtggtggggctggaggtcaggaccaagagtgtgttgacaaagagctggag
ttgctcaacgaggagctgcgcaccatcgagctggagtgcttgaacatcgtccgcgctcac
aagatgcaacagctgagggagcagtgtcgcgagtcctggatgctccacaacagtggcttc
cgcaactacaataccagcattgacgcacgtcgccacgagctctcagacatcacggagctg
ccggagaaatcggacaaggacagctccagtgcctacaacactggcgagagctgccgcagc
acccctctcacgttggagctgtctccagacaactcgctccgccgaggagcagagaatcag
ggtccggctggtgcgtccagctccgccagctccaatggcaaaaccctcaaacctctcctg
tcccccgtccaggaagcctgtggccccagtcggagcagaggctcctccaaggatcccgat
ggagccttgcaagcagagagcaaggagaggaagtcgggagagtccagtaagtccgggcgg
agcttttcccagccacattcaccgtacaagcatgcccacatcccggctcacgcccagcac
taccagagctacatgcagctgatccagcagaaatccgccgtggagtacgcccagagccag
atgagtctggtcagcatgtgccgtgatgccatcagccccagttacctggagcctaagatg
gagtggaaggtgaagatccgcagcgacggcacacgctacatcaccaagcggcctgtccgg
gacaagctgctgagggagcgcgccctgcgcattcacgaggagcgcagcggtatgaccaca
gatgatgacgccataagcgagctgaagatgggccgctactggagcaaggaggagaggaag
cagcacgcagtccgcgccaaagagcagaggcagcgccgcgagttcatgaagcagagccgg
gccgattgtctgaaggagcagcccggcccagaggacaaaaaggagcccaacatcatcgaa
ctcagccacaaaaagatgatgaaaaagagaagtaagaaaatatttgacaactggatgacc
atccaggaactgctgacccatggtaccaagtcaccagatggcacaagggtttacaactca
ctgctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
