Etheostoma cragini (Arkansas darter): 117943683
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Entry
117943683 CDS
T07493
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117943683 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
Kunitz_BPTI
VWA_2
Pur_ac_phosph_N
VWA_3
DUF717
Motif
Other DBs
NCBI-GeneID:
117943683
NCBI-ProteinID:
XP_034725850
LinkDB
All DBs
Position
4:13047649..13109688
Genome browser
AA seq
3076 aa
AA seq
DB search
MRSLFFTVTVLLSSMNRADAQGRCDNVQAADIVFLVDGSSSIGRANFLQVKGFMAGIVKP
FANSVSNSGIRFGAIQYSDTSRVEFTFTTYVVGTELVNAVENLNYKGGNTRTGAGLKFVA
DNFFNPASSRNVPKITILITDGKSQDNVQEPAQKLRSQGVHVFAVGIKSADRNELAEISS
QPSSDFTSFVGDFKLLNTLLPLVSPQVCSRAGGVYASDEAFSGPSNLQFTGQTSDTLRFR
WTAAGGPLIGYLVQYVPLSGLGQPITAELRQETVSVTQRTFTAQELRSGTDYLVTIIAQY
PNSVGESVSAKQRTRSLPGVTSLRLLQAGFFSLSVGWDQPSSPVQGYRLTYGPRGQPADQ
LSEQSLSADSTSVTLESLQPDTEYVVSLFPLFPRNSASPSILNARTLRLEAVQQLSVETE
SEGSVRVGWRGVSGARAYRLVWGPFTGQNVETVEVAGDREFHTLSRLQFDTEYIVTIIPL
YDGNTEGPVATTRFKIDRQEQQVLRAATTSPSTIRLTWRLIPSSQGYRLEWREGEGGRVQ
SRTFPRTTTSYELTGLQPNTEYIITLYTLFEGREEATPVSTTSREEQPVGRVSNLRVVES
LGSTARLGWTGVAGTTQYRIVILNTEAGSEEIRIIPGNQTTLDLRDLAVGVSYGVSVTAL
VGEIEGDPVTIYIKPEQGAGRVTNLRVTNKNSRRLRIAWTGATGATGYRVTWRQGNSAEQ
FRIVGAEVTAFTIDGLQPDEALVVGVSSVVDQRVGEVVTLSTRTNPQGGSVSGLRIVEVT
SQRIRIAWSQSTRSTGYKVTWLRDDGVETTRILPANVSSFTIDGLQSGSAYSILVSSLTG
SREGSPSTLSTRTESDQSVVGSVTSLQVQEARGEVVRVTWVGVQGATAYRVSWRRTDGGE
ERSQLVGGDVTTVDLDRLDPGAQYEVQVMALVQNREGTPVSVRVTTPGAPTPSVPTTTLR
VAEVTRNSMRLGWTPVPGATGYILRWREMDGTDIGRGSSVTLPAASSFYFVTGLQLGRRY
RFTVQPTFESGLGTESFVEEHTVCVGGRLDVVFLVPASTDRISFARPLRQLLTSAVRSLN
TIGARDSQVGVVVYGYRPKIWFLLNRHDRSDTLLQEIQSTPFDESPGNNIGEAVTYTRQY
LLTPSAGRRPRVPGAVVIIADKKSADNLTLAASSLKATGVTVLAVGIDQANTEELRRAVT
DGSTQNLLYTRDALQLDTVYTDLADLLCGIARIPEGPGPDQCTVYCSESEKGERGEKGER
GRDGVDGQKGDPGRDGVPGREGPRGPEGRPGPPGQTVTIDPSLGVKGEKGERGFPGIDGN
PGLPGRPGSPGNAGVPGSQGLPGIRGDPGEPGVTGLQGSKGSKGERGEPGSTTSGGGLPG
RKGEAGIPGIPGTPGRPGSDGLKGSVGDPGIPGQDGRPGLPGTPGISIKGDKGSSGERGL
PGVGSGVAVKGEKGSPGTPGTQGSRGPPGLQGSKGDKGDGGDGPPGPAGRQGEPGDRGPR
GPPGEIGGKGDRGQPGEPGAQGDRGERGPAGETGERGDPGKPGIAGTPGLRGLPGPSGPS
GEKGNEGARGEPGRSALGLPGKKGDQGDRGLAGPEGGRGDKGDMGQKGEKGSSGSGGSAV
GPKGEPGERGLAGVNGRPGAKGDAGEPGERGENGRPGTPGKPGPPGKEGERGEKGDEGTP
GESGLPGKSGERGLRGLAGQPGRAGEKGDIGDPGESGRNGSPGPAGLRGEKGEMGPQGPP
GPPGKVADVQGLLRGERGEKGDAGDPGEHGSKGLKGEAGTPGAPGLRGPEGQRGPAGIRG
DTGERGVPGEKGERGTSGLDGRPGLDGKPGAAGPPGQRGDPGKQGDPGRDGLAGLRGEQG
PPGPVGPPGTAGTPGKAGEDGKPGSPGKMGEDGVPGEDGRKGDKGEPGAAGRDGRDGQKG
DGGLAGPVGPSGPAGPPGVPGSIGPPGQVVYFKGVEAAPIPGPPGPPGTPGVPGIPGAVG
ARGERGPSGLKGDAGDPGEDGAPGKPGTPVDVQKALANFGILVSDLKVVVDRKDVPLIPT
VPKAGKGEKGDVGEQGPRGPSGADGARGFQGERGAKGDQGERGPVGATGPPGRAIVERGP
EGPPGQPGESGKPGIPGVPGRAGELGEAGRPGEKGERGEKGDKGEAGPMGQTGAVGPQGQ
KGASADSVLIGPPGVRGPPGVVGQKGEPGAAGSPGPQGERGFAGSRGDKGDRGQSGEKGR
DGSQGTPGEPGKPGQDGKPGLPGFPGVLGRPGNPGETGMRGPTGPMGPNGLPGPSGVKGN
QGEPGVGVQGPPGAQGSTGLPGPTGTPGAVGPQGPPGLSGQVGEAGKPGVPGRDGVPGKD
GIPGLPGKQGIAGPPGQAGLKGEQGDSGPPGKALAGPPGPKGESGLNGATLPGTVGERGL
PGEKGNRGDKGAVGNKGERGVDGEPGEPGDDGAQGSPGSKGDKGEKGIGLAGPPGRIGPQ
GLKGDPGLPGPAGPPGLQGKSGDAGQPGLRGETGQQGPPGPPGERGLQGFAGRAGNVGPP
GPSGPPGQAGSPGTNGVKGDKGEVGVGVSGPRGERGDAGPRGEEGRPGLDGERGGTGTPG
IRGIRGEKGDVGLQGDKGEKGDTVLVGGPAGEKGNKGETGDRGPKGVQGEKGVKGQEGPV
GEQGLRGEPGERGSTGFPGARGPGGQKGEAGQPGVPGESGLPGKDGLLGQRGEKGELGIV
GLRGIKGDRGPKGACGGNGPKGEKGDAGIHGRSGLPGRKGEQGEIGPSGAPGTPGKEGLV
GPKGDRGFDGLAGPKGAQGEKGERGTPGVPGPPGPRGADGVQGLTGPQGPVGAKGPEGLQ
GQKGERGPIGPAMIGPRGIPGIPGERGEAGELGPDGAKGDRGEPGMTEYEVREYVRSEMS
QHCACGGSGPINRSQPPVRARPSPDQQLVLKGEEGRELRVVVNTNDPDYEHIYSIEAYDD
PLDELLYFAPSTNQSDGEVVKVETDKTVKVEPNKESTADVTKKAKVTLLKAVKPRSVRSK
RRVKGEAPADSCLLPMEEGSCGRYTMRWYFNNQVQACRPFIYSGCEGNDNRFLHLEECEE
LCLGEAEGPRPLKTVL
NT seq
9231 nt
NT seq
+upstream
nt +downstream
nt
atgcggagcctgtttttcactgtgactgtcctgctgtcctccatgaaccgggctgatgct
cagggcaggtgtgataatgtgcaagcggcagatatcgttttcctggttgatggctcttcc
agtattggccgagctaactttctgcaggtgaagggctttatggctggaatcgtcaaacca
tttgccaactctgtcagcaattcagggatacggtttggggccatacagtacagcgacacc
tccagagttgaatttacatttactacctacgtggttggcactgagctggtcaacgctgta
gaaaatctgaactataaggggggaaacacacgcactggtgctggtctcaagtttgttgct
gacaacttcttcaaccctgcgtccagtcgtaatgtcccaaagattactatcctgataaca
gacggaaagtcacaagacaacgtgcaggaaccagcacagaagctgcgcagtcaaggagtg
catgtttttgcggtcggtataaagagtgcagacaggaatgaattggcagaaatctcctcc
cagcccagcagtgatttcacctcctttgtcggggacttcaaactgctgaacacccttctt
cctcttgtgagcccccaagtgtgttccagagcaggaggagtctatgctagtgatgaggca
ttttctggtccgtccaaccttcagttcacaggccagacgtctgataccctcaggtttcgc
tggactgcagcaggggggcctctgattggttatttagtccagtatgttccactttctggc
ctgggtcagccaatcactgcagaactgcgtcaggagactgtctctgtcactcagaggacc
tttaccgcacaagagctgaggtcaggaaccgactacctggtgactattattgcccaatac
cccaacagtgtgggggagtctgtttctgccaagcaacgaaccaggtctttgccaggggtt
accagtctacgcctgctccaggctggcttcttctctctctctgtgggctgggatcagcct
tcgtctcctgtgcagggctacagactcacctatggaccacgaggtcagccagcagatcag
ctgtcggagcagtctctgtctgcagactctacctccgtcacattggagtcacttcagcct
gacacagagtacgtcgtcagcctctttccccttttccctcgaaactcggcatccccgtcc
attctcaatgcccgcacattgcgccttgaggcagtgcagcagctatcagtggagacggag
tcggagggcagtgtccgtgtggggtggagaggcgtcagtggtgcacgggcctaccgtctg
gtctggggaccatttacaggtcaaaatgtcgagacggtggaggttgctggtgacagagag
ttccatactttgtccagactgcagttcgacactgagtacattgtcaccatcatcccgctg
tatgatggcaacactgagggccctgtagcaacgaccaggttcaagatagaccgtcaggaa
cagcaggtgctcagagcagctaccaccagcccctccactattcgcctcacttggagactc
attccgtcatctcaagggtaccgcctagaatggagagagggggaaggaggccgcgtccag
agccggacctttcctagaaccactaccagctatgagctaacaggccttcagcccaacaca
gaatatatcatcaccctgtacactctgtttgaaggtcgggaggaggccacacctgtctcc
accacatccagagaggaacagccagtggggagagtgtccaacctgagagttgtggagtct
ctgggcagtactgcaagactcggctggacgggtgtagccgggaccacacagtaccgcatc
gttatcctgaacacagaagcgggatcggaggaaatacggattatccctggaaaccagaca
acccttgacctcagagacctggcagtgggagtctcttacggtgtcagtgtcacagcgctg
gtgggagaaattgaaggagacccagttactatctacatcaaacctgagcaaggtgctggc
agagtgactaacctcagagtgacaaacaaaaacagtcggagacttcgaatcgcctggaca
ggtgctactggggcaacgggttacagagttacttggagacaaggcaacagtgcagagcag
ttccgtattgttggggcggaggtcacagccttcactatagacggcctgcaaccagatgag
gcgctggttgttggtgtttcatctgtggttgatcaacgtgtgggagaggtggtcacgctg
tctactcggactaacccccagggtggatcggtgtctggccttcgcatcgttgaagtcaca
tctcagagaatacgcattgcatggtcacagtctactaggtcaactggctataaggtcact
tggctccgtgatgatggagttgaaacaactcgcatcttgcccgccaacgtctcttccttc
accattgatggactacagtcaggttcagcctacagcatattagtttcttcccttactggc
tctcgagagggaagtccttccaccctgagtaccagaacagagtcagatcagtctgtggtt
gggtctgtgacgtcactgcaagtccaggaggcacgtggagaggttgtccgtgtcacttgg
gttggtgtgcagggagcaacggcttatcgtgtgtcttggagaagaacggacggtggtgaa
gagagaagtcagctggtggggggagatgtgacaacagtggatttagaccggttggacccc
ggagcccagtacgaggtgcaggtcatggctttagttcaaaacagagagggaacccctgtg
tctgtcagagttaccacacctggtgccccgacgccctccgtacctacgacaactttacga
gtggcggaggttacccggaattctatgcggcttggctggactccagtcccaggtgccaca
ggatatattctacgttggagagagatggatggaacagatattggacgaggctcatcggtc
acgctccctgctgcgtccagcttttactttgtgactgggctgcaattgggccgtaggtat
cgctttactgtgcagcccaccttcgaaagtggattgggaactgagagctttgtagaggaa
cacaccgtctgtgtgggtgggcgtctagatgtggtgtttctggtgccggcatctacggat
cggattagcttcgcaagaccactgcgccaactcctcacaagtgctgtaaggtcgctcaat
actatcggagcccgcgactctcaggtgggagttgttgtatacggttacagacccaaaata
tggttcctgcttaatcgccatgacagatctgacacccttcttcaagagatccagtccacg
ccgtttgatgaaagtcccgggaataacattggtgaggcggtgacatacaccaggcagtac
cttctgaccccctcagctggacggagaccgagggtccctggggctgtcgtcatcattgct
gacaaaaaatctgctgacaacctgactctcgcagcaagcagtctcaaggctacaggtgtg
acagtgttagcggtgggtatagaccaggcgaataccgaggagctgcgccgggcagtgaca
gacggcagcacccaaaaccttctctacactcgtgatgcattacagttggacaccgtatat
actgatctggcggacttgctctgcggcattgccagaataccagagggtccaggtccagat
cagtgtactgtttattgctctgagagtgagaagggagaacgtggagagaagggggagaga
ggcagagatggtgtagatggacaaaagggagatcctggtcgtgatggtgtgcctgggagg
gaaggccccagaggacctgaaggccgcccaggtccaccaggccaaactgtcactattgac
ccctcattgggggtgaaaggagaaaagggggaaagaggttttcctggcattgatggaaat
ccaggtttgccgggacgaccaggttcccctggaaatgcaggagtcccgggttcacagggc
ctacctggtatcagaggagatccaggtgaaccaggtgtcacagggctacaagggtcaaaa
ggcagtaagggtgaaaggggtgaaccagggtcaacaacatcaggagggggtcttccaggg
aggaaaggagaggcaggcatcccgggaataccaggtactcctggccggccaggcagtgat
gggttgaaaggttctgttggagatccggggatacctggtcaggatggtcgcccaggttta
ccaggaacaccaggaatctccatcaagggagacaagggcagctcaggagagaggggactt
ccaggagtcggtagcggggtggccgtgaagggcgagaagggctccccaggtactccaggg
actcagggttctagagggccaccaggactacaaggcagcaaaggagacaagggcgatggt
ggtgatgggccgccgggacccgcaggcaggcaaggagagcctggggacaggggtccccgt
gggcctccaggagaaattggtggaaagggtgaccgaggacagccaggtgagcctggagca
cagggagacaggggggagcgaggaccagctggtgaaactggggagagaggggacccaggg
aagccgggcatcgcaggaacaccagggttgagaggtttaccagggcccagtggaccatca
ggagaaaagggaaacgaaggtgcacgcggggagcctggcagaagtgctcttggcttgcct
gggaagaaaggggaccagggggatcgaggcctagctggtcctgaggggggcaggggagac
aaaggagatatgggacaaaaaggagagaaaggctcttcagggtcgggagggtcagctgtt
ggacctaaaggagagccaggagagcgaggacttgctggtgtcaatggaaggccgggtgcc
aagggagatgctggggaaccaggagagaggggggagaatgggcggccaggaaccccaggg
aagcctggtcctcctgggaaagagggggagagaggagagaagggtgatgaaggcacacct
ggggagtctggactcccagggaagtccggagaaagaggactgaggggactggctggtcag
ccaggccgagcaggagagaaaggagacataggagacccaggagagtcgggacgaaatggc
agccctggacccgcgggactgagaggggagaaaggagaaatgggaccccaggggcctcca
ggaccaccaggaaaagtggcagacgtccagggactcctgagaggagagagaggagagaag
ggtgatgctggcgacccaggagaacacggtagcaaaggtctaaaaggcgaagcggggact
cccggagccccaggcctacgaggtcctgagggacaacggggacctgcaggcataagaggt
gacacgggtgaaagaggagttcctggagagaagggagaaaggggaacgtccgggttagat
ggacgtcctggtctggatggtaaaccaggtgctgctggaccaccgggtcaaaggggggat
cctgggaaacagggggatcctggaagagatggtttagcaggacttcgaggggaacagggc
cccccggggcctgtcgggcctccaggcactgcagggacacctggtaaagcaggtgaagac
ggcaaacctggttctcctggaaaaatgggtgaggatggtgtgcccggtgaagatgggaga
aagggtgataaaggagaaccaggagcagctggaagagatggccgggacgggcagaaagga
gatgggggccttgctgggcctgtcggaccctctggccctgcggggcctcctggagtaccc
ggcagcattggtccccctggacaggtggtgtattttaaaggagttgaagcggcgccgatc
ccaggcccgcctgggcctccaggaacccctggcgtaccagggatccctggagctgtggga
gccagaggggaaagaggtccgtctggcctcaaaggtgatgctggagacccgggagaggac
ggggccccaggcaaacctgggacaccagtggatgtacagaaggctctggccaactttggc
attctggtgtctgatctgaaggtggttgtggacaggaaggacgtaccactgattcctaca
gtgccaaaggcagggaaaggtgaaaaaggagacgtgggcgaacaaggaccgagaggacca
tctggtgcagatggtgcccgtggttttcaaggagaaagaggagcaaaaggggatcaaggg
gagcgaggacccgtgggagcaactggtcctccaggtagagccattgtagagcgagggcca
gaaggacccccagggcaacctggagagtcaggcaaaccaggaataccaggagttcctggg
cgagctggggaattgggggaggctggaagacccggagagaagggggagagaggagagaaa
ggtgacaaaggagaagctggtccaatgggccaaacgggagcagtcggcccacaagggcaa
aagggagcatctgctgactcggtactgattggtccacctggggtccgaggccctccagga
gttgtgggacaaaagggagagcctggtgctgcaggatcaccggggcctcaaggagaacgg
ggttttgcaggatctcgtggtgataaaggagaccgaggacagtctggagaaaaaggacgt
gacggctcacagggaacaccaggagaaccaggaaaacctggtcaagatgggaaaccgggc
ttgcctgggttcccaggagttctaggcagaccgggaaacccaggagagactggcatgagg
gggccaactggcccaatgggtcccaacgggcttccaggtccctcaggtgtgaaggggaat
caaggagagccaggtgttggtgtccagggtcctccgggtgcccaagggagcacaggtctg
ccaggaccaacaggtacccccggagctgtaggtccacaaggccctccaggactctcaggc
caggtgggtgaagcaggcaaaccaggggtacctggcagagatggtgtgcctggcaaagat
ggaatacctggattaccaggaaagcagggcattgctggacctccaggccaggcaggctta
aagggggagcagggagacagcggccccccagggaaggctttggctggaccccctggacct
aaaggagaaagtggtcttaatggtgccacactgccaggcacggttggagagagaggccta
cctggagaaaagggtaacaggggagacaaaggtgctgttggcaacaaaggagagcgagga
gtggatggtgagccaggggagcctggagatgatggggcacagggatcccctgggtcaaaa
ggagataagggagagaagggcataggactggcaggccctcctggtcggattgggcctcaa
ggtttaaagggagatccaggccttcctggtccagctggtcccccggggcttcagggaaag
tcgggtgatgctgggcaacctggcctgagaggagaaactggacaacaaggacctcctgga
ccacctggggagaggggtctccaaggctttgctggccgtgcaggaaatgttggaccccct
ggtccttctggaccgcctggacaggcaggctctcctggtaccaatggtgtcaaaggggac
aagggggaggttggtgtcggggtctccggccccagaggagagagaggagatgcagggcca
agaggagaggagggccgccctggcttggatggggagagagggggaacgggtaccccaggg
attcgtggtattcggggagaaaagggagacgtggggctgcaaggtgacaaaggagagaag
ggggacactgtgctggtgggaggacctgctggagaaaagggcaacaaaggagaaacaggt
gacaggggacccaaaggcgtgcagggagaaaagggggtgaagggtcaagagggtcctgta
ggggagcagggtctgaggggagagcctggagaaagaggatccactgggttcccgggtgcc
cgtggccctggtggacagaagggagaagccggccaacctggagtacctggtgaatcgggt
ttaccaggaaaagatgggctgctggggcagaggggtgaaaagggagaacttggcattgtc
ggactgagaggaatcaagggtgaccgaggacccaagggggcttgtggaggcaatggccct
aaaggagaaaagggagatgctggtattcatggacgatcaggcctaccaggaagaaaaggc
gaacagggggaaatcggaccatctggggccccagggacccccgggaaagagggactagtc
ggtcccaagggtgaccgtggttttgacgggcttgcaggacccaaaggagctcagggagag
aaaggcgaacggggcacgcctggcgtacctggtcctcctggtcccagaggagcggatggg
gtccagggcttgactggccctcagggaccagttggtgcaaaaggcccagagggcctccag
ggacaaaagggagagagaggtccaatcggtcctgccatgattggtccacgtggtattccg
gggatcccgggggaacgaggagaagcgggagagttgggcccagatggagccaagggagac
agaggagagccaggcatgacggagtatgaggtcagagagtatgtccgctcagagatgagt
cagcactgtgcgtgtggaggttcaggtccaattaatcggtcccagcccccggtcagggct
cggccttctccagatcaacaactggtcctgaagggggaggagggccgtgagctgcgcgtg
gtggtgaacaccaacgacccggactacgagcatatctactcaatcgaggcctacgacgac
cccttggatgagctgctctacttcgctccctctaccaaccagagcgatggtgaggttgtc
aaagttgaaactgacaaaacagtcaaagttgaaccaaacaaagaatccactgctgacgtt
acgaaaaaagcaaaagttacacttctgaaagcagtcaagcccagatcagtcaggtccaag
aggagagtcaaaggggaagctccagcagactcatgcttgctgcccatggaggagggcagc
tgtggacgatacactatgcgctggtactttaacaatcaggttcaggcctgcaggcccttc
atctacagcggctgtgaaggaaacgacaaccgcttcctccacctggaggagtgtgaggag
ctctgccttggggaggccgaaggtcctcgtcccttgaagacagtgctatga
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integrated database retrieval system
