KEGG   Etheostoma cragini (Arkansas darter): 117944631
Entry
117944631         CDS       T07493                                 
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
ecra  Etheostoma cragini (Arkansas darter)
Pathway
ecra03420  Nucleotide excision repair
ecra04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117944631 (ercc8)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117944631 (ercc8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ecra04121]
    117944631 (ercc8)
   03400 DNA repair and recombination proteins [BR:ecra03400]
    117944631 (ercc8)
Ubiquitin system [BR:ecra04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     117944631 (ercc8)
DNA repair and recombination proteins [BR:ecra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117944631 (ercc8)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_MABP1-WDR62_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_EML WDR55 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_RIG_1st WD_LRWD1 Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_SCAP
Other DBs
NCBI-GeneID: 117944631
NCBI-ProteinID: XP_034727519
LinkDB
Position
5:4800343..4816567
AA seq 401 aa
MLGFLTARQAGLDDPLRLRRAESTRRVLSLNLNPDRDVDRIHGNGINTIDIDAIEGRYML
SGGADGVIVIYDLENYSGKLQYTCKAVCTVGRSSKYVHKFSVETVQWYPYDTGMFVSSSF
DKTMKVWDTETLKPAEVFQFEDNVYSHHLSPIARKHSLIAVGTKEPKIQLCDLKSGSRIH
VLQGHRAEVLSVRWSPRYEHILATASADSKVKVWDVRRASGSLFTLDQHNGDKSKASSEA
VNTAHDGRVNGLCFTGDGLYLLTTGTDDRMRLWNSATGENTLVNYGKVCNESRKRLQFTV
SRGCSPEFVFVPCGSSVAVYGLHTGELVTMLRGHYNNVDCCEFHPDYQELYSGGKDCNIL
AWVPVIRAADVEEEIKSANQAAANQSSVNTAFQDAWSSDED
NT seq 1206 nt   +upstreamnt  +downstreamnt
atgttgggatttctgaccgcaaggcaggctggtctggatgaccctctgcgactgagacgt
gctgagtcaacgagaagggtcctgagtctgaatttaaatcctgacagagacgtggataga
atccatggaaatggcatcaacaccattgacattgatgcaatagagggaagatacatgttg
tccggcggagcagatggagtgatcgtcatctatgacctggagaactacagcgggaaacta
cagtacacctgcaaggcagtttgcacagtaggcaggtcgagtaagtatgtccacaaattc
agcgtagagacagtccagtggtatccctatgacacgggcatgtttgtctccagttctttt
gacaagaccatgaaagtttgggacactgagacactgaagcctgctgaagtctttcagttt
gaggacaatgtctacagccaccacctgtcccccatcgccaggaaacacagtctcatcgca
gttggcaccaaagaacctaaaatccagctgtgcgacctgaagtcgggttcacggattcac
gttcttcagggtcacagagcggaggtcctgtctgtgcgatggtcacccagatacgagcac
atcttagccactgccagtgcagacagcaaagtgaaagtatgggatgtgcgtcgggcttct
ggtagtctatttactctggatcagcacaatggagacaagtcaaaagcttcctctgaggca
gtgaacacagctcatgatggcagagtgaatggcctgtgctttactggcgacggcctctac
ctcctcaccactggaactgatgaccgaatgcgactatggaatagtgccactggggaaaac
acactggtaaattacgggaaggtctgcaacgagagtcgtaaaagactacagttcacagtg
tcacgtggctgcagcccagagtttgtttttgtgccatgcggcagctcagtagctgtgtat
ggcctccacacgggagagttggtcacaatgctcaggggtcactacaacaacgtcgactgc
tgcgagttccacccggactaccaggagctgtatagtggaggtaaagactgtaatatcctg
gcgtgggttcctgtcattcgtgccgcagatgtggaagaagagataaaaagtgcaaaccag
gctgctgctaaccagtcttcagtgaacactgcctttcaggatgcatggagcagcgatgaa
gattaa

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