Etheostoma cragini (Arkansas darter): 117944699
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Entry
117944699 CDS
T07493
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117944699 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117944699 (usp39)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
117944699 (usp39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117944699
NCBI-ProteinID:
XP_034727653
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Position
5:12136123..12141487
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AA seq
518 aa
AA seq
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MVQEAMAHIQAAPTLTVVMVSLKREREAQVDDDDNEDRVPAKIGRGRVLEDRRSRHCPYL
DTINRSVLDFDFEKLCSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLH
TLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQHIAGLDKQGKLYRAYDGTTYLPGIVGLN
NIKANDYANVVLQAFSNVPPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPR
NFKAHVSPHEMLQAVVLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKRSSIIAKAF
QGSMRIFSKKLPHPDLTPEEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLI
IPQVPLFNILGKFNGNTEKEYKTYKENFLKRFQLTKLPPYLVFCIKRFTKNNFFVEKNPT
IVNFPITNVDLREYLTEEAQVTEKNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEM
QDLQVTDILPQMITLSEAYIQIWKRQESDNGTNHHTGV
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaggaagccatggctcatatccaagcggcccccacacttactgttgtgatggtt
tctctgaaacgagaaagagaggcgcaggtggacgatgatgacaacgaagacagagtgcca
gccaaaataggcagaggacgtgtactagaagaccggagaagccgccactgtccttacctt
gacaccataaacaggagtgtgctggacttcgactttgagaaactctgctcaatctctctc
tcccacatcaatgtctatgcctgtcttatatgtgggaaatactttcaaggtagaggtttg
aagtcccatgcttacactcacagtgtgcagtttactcatcatgtgttcctgaatctgcac
acacttaagttttactgtctgccagacaactacgagatcattgactcttcactagaagac
atcacgtatgtgctaaaaccaactttcaccaagcagcacattgctgggttggacaagcag
ggtaaactgtaccgagcctacgatggtacgacctacctgccaggcattgtagggctcaat
aacatcaaagccaatgactacgccaatgtggtgttacaggctttttccaatgttccaccg
ttgcgaaactacttcctggaggaagaaaactacaggggcatccgccggccaccgggggac
atcatgttcctcttggtgcagaggtttggtgaactgatgcgcaaactttggaatccgaga
aacttcaaagctcatgtgtcaccacatgagatgctgcaggctgtggtgctgtgcagcaag
aagaatttccaaattaccaagcaaggagatgctgtggacttcatgacgtggttcttgaat
gctctgcatggtgctcttggaggcacaaagaaaagatcatcaatcattgccaaagcattt
caaggctccatgcggatcttctccaagaaacttccacacccggacttgactccggaggag
aaagaggcattgctcgtgacagaggagtaccaggagcagatgtctgagtccaccttcctg
tttctaaccctcgacctcccaacagctccactgtacaaggatgagaaggagcagcttatt
atcccgcaggtccccctcttcaacatcctgggcaagttcaatggcaatacagaaaaggag
tacaaaacctacaaagagaatttcctcaaacggttccagctgaccaaactgcctccttac
ctcgtcttttgcatcaaaagattcaccaagaacaacttctttgtcgaaaagaatcccaca
attgtcaacttccctatcacgaatgttgaccttcgtgagtacttgacagaagaagctcaa
gtgacagagaaaaacacaacgtatgacctggtcgccaacgtagtgcatgatgggaaaccc
actgagggagcatacagaatacatgttctgcatcatggaactgggaagtggtatgagatg
caggacctgcaagtgaccgacattctcccccagatgatcacgctgtcggaggcctacatc
cagatctggaagagacaagagagcgacaatggcacaaatcaccacacaggggtgtaa
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