Etheostoma cragini (Arkansas darter): 117944726
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Entry
117944726 CDS
T07493
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04010
MAPK signaling pathway
ecra04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117944726 (cacna1ba)
04020 Calcium signaling pathway
117944726 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117944726 (cacna1ba)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117944726 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Helicase_C_4
Motif
Other DBs
NCBI-GeneID:
117944726
NCBI-ProteinID:
XP_034727690
LinkDB
All DBs
Position
5:complement(8155329..8323786)
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AA seq
1869 aa
AA seq
DB search
MSMKMYGLGPQNYFHSSFNCFDFGVIIGSIFEVIWAAIKPGASFGISVLRALRLLRIFKV
TKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDT
FPAAILTVFQILTGEDWNAVMYHGIESQGGVHRGMFSSIYFIVLTLFGNYTLLNVFLAIA
VDNLANAQELTKDEEEQEVAINKKLALQKAMEVKEVSPMSATNMSITAFLTRSRGNAHSS
SSSICSVNSLSSVITPSGRAASYVCTPVHYLSKEQQKSVKTMSVWEQRANQLRRQNQASC
EALYSELDLEERLHLSSALNIRPDMKTHLDRPLVVEPRDGLLLAGHQHHHHKPSMPEEAE
TATDPPPPMPHQARRHHRHRDRDRSRTKEGTNENSGTSKDRGHHVHHSRSKDHDSSRGKE
VKSERSRSQEGGRRHHHQSLVDDSGGGGTMSEREHQHHHSHRQSLGGNGTVNSGGRGERR
SRHKNGRPSNRDADRNSRGDSGANGERRKHRPYGSRGQSTVEVQVSNEREKDRRFVDSEG
EVLAISEQGSEGVNCPPDRQENSDKQRNITRTGPTSIHIPPVTITSPPGDTTLIQINSID
CATMPMNEKALADRGQSGPKPILPYSSMFIFGQTNPVRRLCHYIVTLRYFEMSILVVIAM
SSIALAAEDPVWTNAPRNNVLKYLDYAFTGVFTFEMVIKMVDLGLLLHPGAYFRDLWNIL
DFIVVSGALVAFAFSSFMGSQQGVTRGTKGKDISTIKSLRVLRVLRPLKTIKRLPKLKAV
FDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGLQKDCKGQFLYYDR
EEVAAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDTGPSPGYRIE
MSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFAINAKPLTR
YMPQNMQSFQYRMWKFVVSAPFEYSIMIMIALNTVVLMMKFHGAPDFYEAMLKNLNIVFT
TLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEINTTDRLLNLSFLRLFR
AARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIEMNEDTA
INHHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSQRACDKLSGSDGEECGSDFAYFYFV
SFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLDM
YQMLLHMSPPLGLGKKCPPRVAYKRLVKMNMPIADDNSVHFTSTLMALIRTALGIKLASG
MVAQRISDYELKKELSTVWPSLSHKTMDLLVTPHKHNELTVGKVYAALMIFDYYKQNRAR
RLQLQQQQQGTSGSQEKDLPMMLNSVEPPSMLQPQPKSHAKSQPQTRPSFNSLNNGGTLQ
GHDHNIKASSSWVMEKPKEAPRAKTKRTMSRGPSEDTPDTAITQESVEMSEIETSASSTI
PFPGSGLENQGRAASMPRLNAELQRSHSRHSPGIPLVSVPDASPMKRSASTAAPQRPQEV
NLRDYTLEKPSQDRPHHHHHHHRCHHRRDRDRDKDREKMQRSLDAPLSGQPPSSAGATED
PDPAASRERAHDRGRSHDRKQHSSANKQRYYSCDRYCSREHCHTKSATTSCAASPSDGQE
TSTKQGSGWVKGSPVALSSSSSTPSRGRRQLPKTPHTPRPGVAYKTANSSPVHFVSSLAS
LSPGRLSRGQSEHNTLQQSGYHHFPCPVTRISSEPFLGQGHDEALSRLYGSLRDQLDVFQ
DAVSRSPSPCAGHSSRTALPQMMGALLPAPQQNLGVPNGYHINFGGRASPGSGVRAPRYY
QEAEEDEWC
NT seq
5610 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaaaatgtatggcctcggaccccagaactacttccactcctcgttcaactgt
tttgactttggggtgattattggcagtatttttgaagttatctgggctgccatcaaaccc
ggggcctcatttgggatcagtgtcctgcgggctctgagactgctcaggatcttcaaagtc
accaagtactggaactccttgaggaacctggttgtatcccttctcaactccatgaagtct
atcatcagcctgttgttcctcctcttccttttcatcgtggtctttgctctgctgggcatg
cagctgtttggtggccaatttaattttgaagatgaaacgccaacaaccaacttcgacaca
ttcccagcagcgattctcactgtcttccagatcctaactggggaggactggaacgcagtc
atgtaccatgggatcgaatcacaagggggtgttcacagggggatgttctcctccatttat
ttcattgttctcactctctttggcaactacacactcctcaacgtgttcttggccattgct
gtcgataacctcgcaaatgcccaggagctcactaaggatgaagaggagcaagaggtggcc
atcaataagaagcttgcactccagaaagccatggaggtaaaggaggtcagccccatgtca
gccactaacatgtccatcacagcttttcttacacgcagtcgaggtaacgcacactctagc
agctcatccatctgcagcgttaactcactctcctctgtgatcacaccttctggtagagct
gcgagttatgtctgcaccccagtccactatctgagtaaggagcagcagaagtcagtgaag
acaatgtctgtgtgggagcagagggccaaccagctgaggaggcagaaccaggcgagctgc
gaggccctctacagtgagctggatcttgaggagcgtcttcacctgtcctcggccctgaac
atccggcctgacatgaagacccacctcgaccggccgctagttgttgaaccgcgtgatggg
ctattgctggccggccatcaacaccaccatcacaagccctccatgccagaggaggcagaa
actgccactgaccctcctcctcctatgcctcaccaggcccgtcgccaccaccgccacaga
gacagggaccggtccagaacaaaagaggggacaaatgaaaacagtggcacaagtaaggac
aggggccaccacgtccatcacagccgctccaaagaccatgacagcagccggggcaaagaa
gtgaagagcgagaggtcccgaagccaagaaggaggcaggagacatcaccatcagagctta
gtggatgacagcggaggtggaggaaccatgagcgagagagagcatcaacatcatcattca
caccggcagtccctagggggaaatgggacagtgaacagtggcgggaggggagagcgaaga
tcccgccacaaaaatggacgtccgtctaacagagatgcggataggaattccagaggagac
agtggtgccaatggagagcggaggaaacatcggccttatggatcaaggggccaatccaca
gttgaagtacaggtgtccaacgagagagagaaggatcgcaggtttgtcgactcagagggt
gaggtcctcgccatctccgagcagggctctgaaggggtcaactgtcctcctgaccgacaa
gagaactcagacaagcagaggaacattacaagaactggcccaacctccatccacattcct
cctgtgactattacttctccacctggagacaccaccctcatacaaattaacagtattgac
tgtgcgacaatgcccatgaatgagaaggccctggcggatcgaggtcaaagtggacccaaa
cccattctgccttacagttctatgttcatcttcggacagactaatccggtgaggcggtta
tgtcattacattgtgactctgcgttattttgagatgtccatcctggttgtcatcgcaatg
agcagtattgctttggcagcagaggaccctgtctggacaaacgcccctcgcaacaatgtg
ctcaaatatctggattatgcctttactggtgttttcacttttgaaatggtgatcaagatg
gtggaccttggcctgttgcttcatcctggagcctacttcagagacctgtggaacattctg
gacttcatagtggtcagtggggcgctggtggcttttgcattttcgagcttcatgggatcg
caacaaggtgtgaccagggggaccaaaggcaaagacatcagcactatcaagtcactgaga
gttctccgagtgctcaggcctctcaagaccatcaaacgtctgccaaaactcaaggcggtg
ttcgactgcgtggtcaattctttgaagaatgtgctgaacatcctcattgtttacatcctc
ttcatgttcatctttgctgtcatcgcagttcagctcttcaagggaaaattcttctactgc
acagatgagtccaaggggctgcagaaggactgcaaaggacagtttctctactatgacagg
gaagaggtggctgccatgcccagagagtggaagaaatatgagttccattacgacaatgtg
ctgtgggcctttttgacccttttcactgtctccactggggagggctggccaactgttttg
aagcactctgtggatgctacctttgaagacacaggtcctagtccaggctaccggatagaa
atgtccatcttctatgtggtctactttgtggtcttccctttcttttttgtcaacatcttt
gtggctctgatcatcatcaccttccaggagcagggagacaaggcattgtctgagtgcagt
ttggaaaagaatgagagagcttgtattgactttgccataaacgccaaacctctgacacgc
tacatgccccagaacatgcagtccttccagtacaggatgtggaagtttgtggtctcagct
ccatttgagtactccatcatgatcatgattgctctcaatactgtggtactcatgatgaag
tttcatggagctccagacttttatgaagcaatgctgaagaacctcaatatagtcttcacc
actctcttctctctggagtgtatactcaagatcattgcttttggtccattgaactactta
aaggatgcttggaacgtgtttgactttgtcacagtgttgggcagcatcactgacatcctg
gtgactgaaatcaatactacggacaggctgctgaacctgagcttcctgaggctgttcaga
gccgctcggctcatcaagttgctgagacagggctacaccatccgcatcctgctgtggacc
ttcgtccagtcctttaaggccctgccttatgtttgcctcctgattgctatgctgttcttc
atttatgccatcattgggatgcaggtgtttggcaacattgagatgaatgaggacacagct
atcaatcaccacaacaacttccgcactttccttcaagctctaatgctgctgttcaggagt
gcaactggtgaggcctggcacgagatcatgttatcatgtttaagtcaacgagcctgtgac
aagctatcagggtccgatggggaagaatgcggcagtgattttgcatacttctactttgtc
tcctttattttcctctgctccttcctgatgctgaacctgtttgtggctgtcataatggat
aactttgagtacctaaccagagactcctccatcctggggcctcatcaccttgatgagttc
atccgggtttgggctgagtacgaccccgctgcatgtggccgtatcaagtacctcgatatg
tatcagatgctgctccacatgtccccacccttaggtttgggaaagaaatgtccgccaaga
gtcgcttacaagcgcctcgtcaaaatgaacatgcccattgctgatgacaacagcgtccat
ttcacctccactctgatggccctgattcgcactgcccttgggatcaaactggcctcaggc
atggtagctcagcgaatatctgactatgagttaaagaaggagctgtcgacagtgtggccc
agcctctctcataagaccatggatctgttggtgacgccacataaacacaatgaactgacg
gtaggaaaggtttatgctgccctgatgatcttcgactactataagcagaatcgagcgagg
aggctgcagctgcagcagcagcaacagggcacatcaggttcccaggagaaagatctgcct
atgatgttaaacagtgtggagcctcccagcatgcttcagccccagcccaaatcccatgcc
aagtcccagccacagaccagacctagcttcaactccctcaacaatggaggcacactgcaa
ggccatgatcacaacatcaaggcatcatcatcttgggtgatggagaaacccaaggaagca
ccccgagctaagaccaagagaaccatgtccaggggcccatctgaggacacaccagacact
gccatcacccaggagtcggtggagatgagcgagatagagaccagtgccagcagtacaatc
ccattcccaggctcaggtctggagaaccagggcagagctgcctctatgcctcgactcaat
gctgagctgcagcggagccactcacgccactctccagggatccctctagtttctgtccct
gatgccagtcctatgaagcgctcagcgtccactgcagccccacagcggccccaggaggtc
aacctgcgggactacaccctggagaaacccagccaggaccgaccccaccaccatcatcat
caccaccgctgtcaccatcgtagagacagggacagagataaagacagagagaaaatgcag
aggtctttggatgcacctctgagtggacaaccaccaagctcggctggtgcaacagaagat
ccagacccagctgcctccagagagcgagcccacgaccgtggacgctcccacgacaggaaa
caacactcctcggcgaacaagcagcgctactactcctgcgaccgctactgcagtcgggaa
cactgccacaccaaatctgccaccaccagctgtgccgcctctcccagtgacgggcaggaa
accagcaccaagcagggcagtggttgggttaaaggaagcccagtggcactgagctccagt
tctagcacaccaagccgcggacgtcggcagctccccaagaccccccacaccccgcgacct
ggggtggcctacaagactgccaattcatctcctgtgcactttgtgtccagcctggcctct
ctgagtcccggccgactaagccgcggccagtcggagcacaataccctccagcaaagcggc
taccaccactttccctgccctgttactcgtatcagctccgagcctttcctgggccagggc
catgatgaggccctgagcagactctacggaagtctccgggaccagctggacgtctttcag
gatgcggtgtcacggtcgcccagcccctgtgctgggcactcatctcggaccgcacttcct
cagatgatgggagccctgctacctgctccacagcaaaaccttggggtgcccaacgggtac
cacatcaactttgggggcagagccagcccaggctctggcgtcagggcacccaggtattac
caggaggcagaggaggacgaatggtgctag
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