Etheostoma cragini (Arkansas darter): 117944756
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Entry
117944756 CDS
T07493
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117944756
04518 Integrin signaling
117944756
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117944756
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117944756
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117944756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
DUF7949
Pur_ac_phosph_N
Fn3_VIN3
Fn3_Dep-1_2nd
fn3_2
NDNF
FN3_Tor_3rd
EGF
Big_5
Motif
Other DBs
NCBI-GeneID:
117944756
NCBI-ProteinID:
XP_034727747
LinkDB
All DBs
Position
5:complement(2843247..2924475)
Genome browser
AA seq
1694 aa
AA seq
DB search
MGMKGFLLCGLTVAMIFQLSTAGLVKKVIRHRREALMPKKTQENITVPHPDQPVVFNHVY
NINVPSTSLCSVDLDSPGDSELKHKSAPMDMQNSEHMEHTVDGDNQIVFTHRINIPKQAC
GCDNQAPDIKDILNRLEMLESELSSLREQCSSGAGCCGAQVTAGDVSTKPYCNGRGNWST
DTCSCICEPGWKGPNCTEPECPNDCQDQGRCVDGKCECFEGFGGDDCGIELCLLDCGDYG
HCVDGSCLCEEGFIGQDCTQTNCLNNCLGRGRCEDNECVCDEPWTGYDCSELICPNDCYD
RGRCVNGTCYCEQGYTGEDCGELTCAGNCNNRGMCVNGQCVCQTGYSGEDCSKLTCPQNC
NEKGHCFNGKCICDPGFEGEDCSILSCPENCSNRGQCINGECVCDIGYQGEDCSELSCLN
NCQDLGLCVNGQCVCNKGYAGEDCSIKTCPKDCMGQGECVDGKCVCFVGFTGKDCGQLTC
PNDCLDRGHCVNGQCVCHKGFAGEDCSEKTCPKNCLDRGYCVDGNCVCYEGFTGPDCSML
TCPEDCQNQGNCENGVCVCNEGFIGEDCSGVSPPKDLTVVEVTPETVDVSWANEMRVNEY
LITYVPTAPGGLELDMRVPGDQKMTTIRELEPGVEYLISVFAVLNNKRSLPVSARVATHL
PEPEGLKFKSVRETSVEVQWDPLDISFDGWNLIFRNTKEEDGEILNSLGRPETTFEQSGL
GPGQEYEVKLEVVKNNKRGPPASQSVITMIDAPGQVDVRDVTDTTALVTWFQPVAEVDGV
SVSYGPISNPAERKVVELSSTDTQYHLGGLTPDTQYEVSLLARRGERTSVPIYESFLTDL
DAPRDLQTVELTDESITLEWKNSQAPVDNYRIKYGPLSGGEHGELLFPPGPKDTTRAKIT
GLRPSTEYGMGVTAVTDERESLPTTTNAVTALDAPKNLRVVEVTETTMMLEWTRPLAKLD
SFRLVYVSADGHRAEEVIPGSSESHTLRGLTPGMLYTISIIAERGRRTSAPSTISAPTEE
EKPVVTNVTVSDVSWDSFLLSWSAEDGALEAFLIEVTDAETGAEWQNHTVPADARSLAIS
GLSSTTWYRASLYGVFRGALLDPVFADTITEAEPEMQALVVSDVTSESFRLAWTAEEEAF
DTFVVMVSQAEGPGQPRELVLGGEEWSTAITDLAEDTEYKVEIFGLILGRSSKSVMEWVR
TDVGPPKGFRFSDVTDTSATVHWGVPRARVDSYRVTYVPAHGGNAKTLTVDGSESQTVLP
NLTPGVTYEVTVIAVKGQRESEPGSDSVTTALDKPRGLTAVNITDTEALLLWQPAIATVD
GYVITYSADSVAPVMERVSGNVVEFEMSSLTPATHYTVKVYAVRDLAKSAATTTEFTTDV
DAPLDLAASNIQTENGMLTWKPPRADITGYILSFESADGVVREVVLSPNAVSYNMAQLSA
STEYSVKLQAIAGPKRSRVITTVFTTTGVLYRHPKDCSQALLNGDTSSDLYTIYLGGDES
QPVQVYCDMSTDGGGWIVFLRRQSGKLEFFRNWKNYTAGFGDMNDEFWLGLSNLHKITAG
GQYELRVDLRDKGETAYAQYDKFSVSEPRTRFKVHVGGYSGTAGDSMTYHHGRPFSTYDH
DNDIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIR
PSNFRNLEGRRKRS
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgaaaggctttctgttatgcggcctgaccgtggccatgatcttccaactctcc
actgccggcctggtcaagaaggtcatccgccaccgtagagaggctttgatgcccaagaaa
acccaggagaacatcacggtgccccaccccgaccaaccggtggtgttcaaccacgtctac
aacatcaatgtaccctccacgtctctctgctctgtggacctggactcgcccggtgactct
gagctcaaacacaagagtgccccgatggacatgcagaacagcgagcatatggagcacaca
gtggacggtgacaatcagatcgttttcacccaccgcatcaatatccccaagcaggcatgc
ggctgtgacaaccaagcgcccgatatcaaggacatcctgaaccgactggagatgctggag
tccgagctgtctagtctgagagagcagtgcagcagtggggcaggctgctgtggagctcag
gttaccgcaggtgatgtgtccacaaagccttactgtaatggccgtgggaactggagcact
gacacctgcagctgcatatgtgagcctggatggaagggccccaactgcaccgaacctgag
tgccccaatgactgccaggaccagggccgctgtgtggatggcaaatgtgagtgctttgaa
ggctttggtggggacgactgcggtattgagctctgcctgctggactgcggtgactatggc
cactgtgtagatgggtcctgcctctgtgaggagggcttcattggtcaggactgcacccag
accaactgcctcaacaactgcctgggccgtggacgctgcgaagacaatgagtgtgtttgc
gacgagccgtggacgggctacgactgctccgaactcatctgtccaaacgactgctatgac
cgtggacgctgcgtcaatggtacctgctactgtgaacagggctacactggagaagactgc
ggggagctcacttgtgccggcaactgtaacaaccgtggcatgtgtgtgaatggccagtgt
gtgtgccagaccggctacagcggagaggattgctcgaagctcacctgtccccagaactgc
aatgagaaaggccattgctttaatggaaagtgcatctgtgatccaggatttgagggtgaa
gattgctctatcctctcctgccctgagaactgcagcaacaggggccagtgcattaacgga
gaatgtgtatgtgacataggataccagggcgaagattgtagcgagctctcctgccttaac
aattgccaagaccttggcctctgcgttaacggacagtgcgtatgtaacaaaggctatgct
ggggaggactgcagcatcaagacttgtccaaaagactgcatgggacaaggagaatgcgtg
gatggcaagtgcgtgtgctttgtcggattcactgggaaagactgcggccagctgacctgc
cccaatgactgcttggaccgtggtcactgtgtgaacgggcaatgtgtttgtcacaaaggt
tttgccggtgaggactgcagtgagaagacgtgtcccaagaactgtcttgatagaggttac
tgcgtcgatggcaactgtgtgtgttatgaaggtttcaccgggcctgactgctcaatgctg
acctgcccagaagactgccaaaaccaggggaactgtgagaacggagtgtgtgtttgcaac
gagggcttcattggggaggactgctctggggtctcacctcccaaggacctgacagtggtg
gaggtcaccccagagacggtggacgtgtcctgggcgaatgagatgcgcgtgaatgaatac
ctgatcacctatgtgccaacggcccctggaggtctggagctggacatgcgggtgcctggg
gaccagaagatgaccactattcgggagcttgagcctggtgtggagtacctgatcagcgtt
tttgctgtgctcaacaacaagaggagtcttcctgtcagtgctagggtggctacacatctg
cccgagcctgagggactaaagtttaagtctgtgcgggagacgtcagtggaggtgcagtgg
gacccattggacatttctttcgatggctggaacctcatattcagaaatacaaaagaggaa
gatggtgagattctcaactccctcggccgtccagagaccacctttgagcagtcgggcctg
ggccctggccaggagtacgaggtcaagctggaggtggtgaagaacaacaagcgtggaccg
cctgcttcccagagcgtaatcacaatgattgatgcccccggccaggtggatgtgcgtgac
gtgacagacaccacagccctggtgacctggttccaacccgtggcggaggtggacggggtc
agcgtctcctacgggcccatttccaaccccgctgaacgcaaggtggtggagctgtcctcc
actgacacacagtaccacctggggggccttacccccgacacccagtacgaggtgtcgctg
ttggctcggaggggagaacggaccagcgttcccatctatgagtctttcctcacagatctg
gacgcccccagagacctgcagacagtggagctgacggatgagagcatcaccctggagtgg
aagaacagccaggctccggtggacaactaccgcatcaagtacggacctctgtcagggggg
gagcacggagagctgctcttccccccgggacccaaggacaccacccgggccaagatcacc
ggcctgagaccgagcaccgagtacgggatgggtgttaccgcagtgacagatgagcgggag
agtctgccgacaaccaccaacgcagtcactgccctggatgctcccaaaaacctgcgtgtt
gtagaagtgacggagacgaccatgatgctggagtggacacgcccgctggccaaattggac
tccttcagactagtttacgtgtctgctgatgggcaccgagctgaggaggtcatcccaggc
agctcagagtcccacactcttaggggccttacacctggcatgctttacaccatcagcatc
atcgccgagaggggccgcaggactagtgcacccagcaccatctcagcaccaacagaggag
gagaagcctgtggtgaccaatgtcaccgtcagcgacgtatcgtgggacagcttcctcctg
tcctggtctgctgaggacggggcattggaggcctttctgatcgaggttaccgatgcagag
acgggcgctgagtggcaaaaccacacggtgcccgccgatgctcgcagcctggccatctct
ggcctctcctccaccacctggtacagggccagtctgtacggggtgttcaggggggccctc
ttagacccggtctttgcagacaccatcacagaggccgaaccggagatgcaggctctcgtt
gtctccgacgtcacctctgagagctttaggttggcctggacggctgaagaggaagccttc
gacacctttgtggtaatggtcagccaggccgagggcccaggccaaccaagagagctggtg
ctgggtggtgaggagtggagcacagctatcacagatctcgccgaggacacagagtacaaa
gtcgaaatctttgggctcattttgggaagaagctctaagtctgtaatggagtgggtgaga
acagatgtgggtccacccaagggtttccgcttctctgatgtcacggacacgtcggccacc
gttcactggggggttcccagagcacgggtggacagctacagggtcacctacgtgcctgct
catggaggtaatgcgaagactctgacagtggacggctcggagtctcagaccgtgctgccc
aatctgacccccggggtcacctatgaggtcaccgtaattgctgtcaagggtcaaagggag
agtgagcctggatcagacagcgtcaccaccgctctggataaaccccgtggtctgactgca
gtcaacatcacagacactgaggccctgttgctctggcagcccgccatcgccactgtagac
ggctacgtcatcacctacagcgcagactcggtggctccagtgatggagcgcgtgtcagga
aacgtcgtggagtttgagatgagctccctgacgcctgccacgcactacactgtgaaggtg
tacgctgtgagggacctggccaagagtgcagccaccaccacagagttcaccaccgacgtg
gacgcccctctggacctggcagccagtaacattcagacagagaacggtatgctgacgtgg
aagccacctcgggctgacatcaccggatacatcctgagctttgagtcggcagatggcgtt
gtccgtgaggtggtcctgagtcccaacgctgtctcctataacatggcccagctcagcgcc
tccacagagtattcagtcaagctgcaggccatcgctggtcccaagagaagccgagtcatc
actactgtcttcaccaccactggtgtcctgtacagacaccccaaggactgctcccaggcc
cttctgaatggagacacctcatcagacctgtacaccatctatctgggtggggatgagagc
cagcccgtccaggtctactgcgacatgagcaccgatggaggtggatggattgtgttcctc
cgacgacagagtggtaaactggagtttttccgcaactggaagaattacacagctggcttt
ggtgacatgaacgatgaattctggctgggtctttccaacctgcataagatcacagctgga
ggacagtacgagctgcgagtggacctcagagataagggagagacagcctacgcccagtac
gacaagttctccgtctctgaaccccggacccgcttcaaagtccacgtaggaggatacagt
ggaacagcaggtgactccatgacgtaccatcacgggcgtccattctccacttacgaccac
gacaacgacatcgccgtcaccaactgtgccctgtcctataagggagcgttctggtacaag
aactgccaccgcgtcaacctcatgggacgctatggagacaacagccacagcaagggtgtc
aactggttccactggaaaggccacgagcactccatcgagtttgctgagatgaagatcagg
ccgtccaacttcaggaatctggaaggaagaaggaaacgatcataa
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