Etheostoma cragini (Arkansas darter): 117944815
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Entry
117944815 CDS
T07493
Symbol
vcp
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04137
Mitophagy - animal
ecra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117944815 (vcp)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
117944815 (vcp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117944815 (vcp)
03009 Ribosome biogenesis [BR:
ecra03009
]
117944815 (vcp)
04131 Membrane trafficking [BR:
ecra04131
]
117944815 (vcp)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117944815 (vcp)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117944815 (vcp)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117944815 (vcp)
Membrane trafficking [BR:
ecra04131
]
SNARE
SNARE associated proteins
Others
117944815 (vcp)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117944815 (vcp)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117944815 (vcp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
Vps4_C
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
IstB_IS21
ATPase_2
AAA_18
AAA_7
DUF815
ABC_tran
AAA_24
NB-ARC
TsaE
ResIII
Sigma54_activat
NACHT
Viral_helicase1
SLFN-g3_helicase
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
117944815
NCBI-ProteinID:
XP_034727843
LinkDB
All DBs
Position
5:13449040..13458260
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLATAILKQKSRPNRLIVDESINEDNSVVSLSQTKMDELQLFRGDTVLMK
GKKRRETVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF
GRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFKWALSQSNPSALRETVVEVPNITWEDIG
GLDDVKRELQELVQYPVEHPEKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRMSILKAN
LRKSPISKDVDVDYLAKMTNGFSGADLTEICQRACKLAIRESIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSSTAGG
SGPTHGSGGTGTGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggaggggaatccaaaaatgatgatctagccactgcaattctgaaacagaag
agcagacccaacagactgattgttgatgaatccatcaatgaagacaacagtgtggtctct
ctctctcagaccaagatggatgagctgcagctgtttcgtggagacactgtgctgatgaag
ggaaagaagaggcgggagactgtctgcattgtgctgtctgacgacacctgctccgatgaa
aaggttcgcatgaaccgggtggtccgcaacaatctgagggtcagactgggtgatgtcatc
agcattcagccatgtcctgatgtgaagtacggaaagaggatccacgtcctccctatagat
gacacagtagaaggaattactggcaacttgtttgaggtctacctgaagccatactttctg
gaggcttacaggccaattcgcaaaggtgatattttcctggtcagaggaggcatgcgtgct
gtggagttcaaggtggttgagactgacccctctccctactgcatcgttgctcctgataca
gttatccactgtgagggagagccaatcagaagagaggatgaggaagagtccctgaacgag
gttggctatgacgacattggaggagtcagaaagcagttagctcagatcaaagagatggtg
gagctgcctcttcgacaccctgcactattcaaggccataggagtcaagccgccacgtgga
atcctgctatatggaccccctggaactggaaagacattgattgcaagagctgtagccaat
gaaactggagctttctttttcctgattaatggtcctgagatcatgagtaagctggcagga
gagagcgagagtaacctgagaaaggcctttgaagaagcagagaagaatgctcctgccatc
atctttattgatgaacttgatgcaatcgctcctaagagagagaagactcatggagaggtg
gagaggcgcattgtttcccagctgctgactcttatggatggcctgaaacagagagctcat
gtcatcgtcatggctgccaccaacagacccaacagcattgacccagctctcaggagattt
gggcgttttgatagggaagtggacatcggcatccctgatgccactggcagattggagata
ctccagattcacaccaagaacatgaaactggctgacgatgtcgacttggaacaggtagcc
aatgagacccatggacatgtgggtgcggatctggccgctctctgctccgaggcggccctg
caggccatcaggaagaagatggacctgatcgatcttgaggacgagaccattgatgctgaa
gtcatgaactcacttgctgtcactatggatgacttcaagtgggcgctgagccagagcaac
ccatctgcactgagggagacggttgttgaggttcccaacatcacctgggaggacatcgga
ggtctagatgatgtcaagagggagctgcaggagttggtgcagtatccagtggaacacccg
gaaaagttcctcaagtttggcatgacgccatccaagggcgtgctgttctatggtccccct
ggttgtggtaagactctgctggccaaagccatcgccaacgagtgccaggcaaatttcatc
tccatcaaaggaccagagctgctcaccatgtggtttggagagtctgaggccaacgtcagg
gagatctttgacaaggcgcgtcaagcagcaccatgtgttctcttctttgatgagctggac
tccatagccaaggcccgtggcggcaacgtgggagatggtggcggagcagccgaccgcgtc
atcaaccagatcctcactgagatggacggaatgtccagcaagaagaacgtctttatcatt
ggagccacaaacagaccagacatcatcgaccctgccatcctgagacctggccgtctggat
cagctcatctacatccccctgcccgacgagaagagcaggatgagcatcctgaaagccaac
ctccgcaagagccccatcagcaaggatgtggacgtggactacctggcaaagatgaccaat
ggcttctctggagcagatctgactgagatctgccagcgggcgtgtaagctggccatcaga
gagagcatcgagaatgagattcgcagagagagggagaggcagaccaacccttcagccatg
gaggtggaagaggatgatcccgtgcctgagatcaggaaggaccactttgaggaggcaatg
cgatttgctcgtcgctccgtcagtgacaatgacatccgcaaatatgagatgtttgctcag
acactgcagcagagccgtggctttggcagcttcaggtttccctccagtactgcaggtgga
agtggtccaacccatggctcaggaggaactggcactggtccagtattcaatgaagacaac
gacgatgacctttatggataa
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