Etheostoma cragini (Arkansas darter): 117945021
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Entry
117945021 CDS
T07493
Symbol
pkd1l2a
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ecra04040
]
117945021 (pkd1l2a)
04091 Lectins [BR:
ecra04091
]
117945021 (pkd1l2a)
Ion channels [BR:
ecra04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
117945021 (pkd1l2a)
Lectins [BR:
ecra04091
]
C-Type lectins
Others
117945021 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
SUEL_Lectin
Lectin_C
Ion_trans
REJ
GPS
DUF7504
Motif
Other DBs
NCBI-GeneID:
117945021
NCBI-ProteinID:
XP_034728151
LinkDB
All DBs
Position
1:19070569..19092764
Genome browser
AA seq
2478 aa
AA seq
DB search
MSCLVKGAGQEDTEGLSCPENQESFDGSCYEFLGLQRSFLSAQGWCEQGGGHLAFILNDE
TQQFLQKHLDPEMDWWLGLAPAAPNLTLDSAATEGSLAWLDGSDVSYSNWMNMPETQAAC
GHILRHSGFQWEATENCSQELNFICQFDSGRSIACDGQNATLQCGSGQVIEIDDSFYGRK
TIHYCRSKLTSSPTSSQEECSWIDVIDSVTAHCHGRQTCQAPVDLSSFGEPCPMMGSYMS
VEYSCKHGLHLLMSKLAAVFDNVTVTVKWLLHPFQGNLTCTMNAGDGHIIDPYSPEEMES
TVMHKFSLPGVFIVRVECNTSDWHVTAQKAITIQEPIRDFGVIKCYSSNMSTDGTKCNAL
HGGPLQIQVTVEAGTNVSYTFQHEGHLVAKSSAERGITPHNITLSASVVEELGHGCHNLT
VTASNRVTAHTVSTDLELCLLEPVEGLQASVIAEEDTCPDSNDLIIGVSLDKGAPVELLF
NLTGGRDTLSETRHILNGSLQAYTFSSPLKGPLKVNMRAANAISASDVDVNFENILWACQ
NDSDYSPDKHQNTTGGVSIDDLKITATPDTLFDYTQSVKLSVIGTESLSSKGLTFEWRCE
GNCKCTNKTKDQTHVIEKDCLPNPFDIFNYTVTVSRRTWFREWVDLASASKCVTVTPKEF
TDVTISCHDCASINVNDHVKLRLSCVTTCPDVVWYIEDLKPLTDDLKKCYSEAGRRPPIE
RQDGNTEYVVHSQHLKVSRDTLHNISVVAYGKSVPGFAKYTFPIPGAEPTEPAATDAPAE
PRPPSCSVSPPSGTVLDAFDITCKASSFCSTGCLYCFKTDTGKHLRCSNANEVKSVFLPV
GDKNNNYSLSVVVTVKNEYEKATTTVSTQVRKSSSSTTVEALQSAVEDTVSQLEQQGLLS
GETLGQMFSSVSDMLNTEDRQDQKDARTKLRKQMLTKMTTILLDSPTNTSQEVQVTARAV
AGLTQRADELSLAAQEEAGSLLVDLSSFLNTISVSQEDGDDGEVAQAATPIVEAASNILN
ASSNEKVSDFLLTGISNVQSALLNNKKLDGEPAIIDSGQISVYVNRVSPEKMQMQDINVQ
KNSSSRFSFPSLPAHVVSPEDPVDVRMMSFEKNPYSWKEENITGTVGSVSLTRVNGTVIT
VENLPDEIEILLPRHDVGQENRTVLDLANFSTLIINVPSPDVTLVLKIDPSENISFMLFL
GYKDYPNDVNYVAKTQIPLLNAKEEEKYTWVLRPKDRTGEVGEHYLVMKPIVEPGVKSVN
ATVTVISIAAQCKYWNETESSWSEDGCRVGPLTTPLVTQCLCNHLTFFGSSFFVMPNLVD
VSRTAELFATFTNNPVVVCFVGAIFAAYLLVVVWARRKDIQDSAKVKITVLEDNDRLAEY
HYMLNISTGHRHGASTSSQVTITLLGTEGESEPHHLTDPEKPVFERGGVDMFLLTTHFSL
GDLQSIRLWHDNSGAHPAWYVNKVMVQDLESFQKWHFLCNSWLAVDVGECTLDKVFPVAT
ETDLKRFSNLFFMKTAKDFQDGHIWFSVISRPPCSTFTRVQRVSCCFSLLLCTMLTSIMF
WGIPTDPSEQTMDLGHIEFTWQQVMIGLQSSIIMFPINLLIVSIFRNTRPRERGSKTDTS
KQGKTGRVSPSQTLSPQKELKDITPDTVLKDIRRIAQSLSKAMKNPLPHLELRPGQQADI
NTLLSLVEDIIRHQSRAAGDFYTDASKRDGSMILSLRAVNLQENSVWTSPEKSSDEFQKK
SSNNSRFLYKQLRHVEKELGLLGPSRFPNPDSYNRAMQQVQGMKGLLEFHLPSSSLEGDQ
LDRSPSPEESIIRDSTKKCCRGGLPWWFVFVGWILVIATSGVSGYFTMMYGLTYGKDRSI
GWLISMVVSFFESLFITQPLKVLGFAAFFALVLKNVDQEEYGEPQIDESLRNTDDPDAVR
AARRDSTCSFYQPPPPTDIERIRNNMIKEQKVFALIREILAYMGFMWMLLLVAYGQRDPN
AYFLTQHIRQSFSKGISDSMSIQDVFNWANTTLLSNLFGEHPGFITDGNSKLVGNARLRQ
VRVHQNSCLVAPSMQQSQRDCHALYSWELEDMDSYSPGWSRSLGDNASLNLQSPWMYQSQ
GKLRAFPIWGSVMLYRGGGFVVDLGPDIHNSRRSLQYLYDNTWFDVYTQAVFVEFTVYNA
NINLFCIVTLMLETTAIGAFQFRSELQGVRLYQSTGGLHIFVMASEAIYFLFIIYYMFVQ
GKLIKQQRSAYFKSKWNLLELAIIILSWSALSVFIKRTLLGKRDIEYYQNNKDQYASFHE
TAKADAVLGYLIAFLVLLATVKLWHLLRLNPKLHMITATLQRAWNDISGFLLVMTIMFLA
YSIASNLMYGWKLYSYRTLLDAAQTMVSLQLGIFNYEEVLNYNPVLGAFLIGSCIVFMTF
VVLNLFISVILVAFSQEQIYHKPSEEEEIVDLMLMKLFCLFGIKCKKQGGERLTEGPVVS
SASNNGLLTISSGDLSEG
NT seq
7437 nt
NT seq
+upstream
nt +downstream
nt
atgtcatgccttgtcaaaggtgctgggcaggaggatacagagggtctatcctgcccagaa
aaccaagagagttttgatggctcttgctacgaatttctgggtctgcagcgatcctttctc
agtgcccaggggtggtgtgagcaaggcggcggacacctagccttcatcctgaatgatgaa
acacagcagttcctccagaagcacctggacccggagatggactggtggcttgggctggca
cctgcagctccaaacctcacactcgactctgctgccactgagggttctcttgcgtggttg
gatggttcagatgtcagctatagtaactggatgaacatgccagaaacccaagccgcctgt
ggacatatcctgagacattccggcttccagtgggaagccacggagaactgcagccaggaa
ctcaacttcatttgccaatttgattctgggagatctatcgcatgtgatggccaaaatgca
acattgcaatgcggttctggtcaagttatagaaatagatgacagcttctatggtcgaaaa
acaattcactactgcagatccaaacttacatcctcacccacatcctcccaggaggagtgc
agctggatagacgtgatagattctgtaacagcccattgccacggacggcagacttgccag
gctccagtggatctgagctcttttggtgaaccatgtcctatgatgggaagttacatgtct
gtagagtacagctgcaaacatggactccacctgttgatgagtaagctggcggctgtcttt
gataatgtcaccgtcactgtgaagtggctccttcatccttttcagggaaacctcacatgc
acaatgaatgctggagatggccacatcatcgatccatacagcccagaagagatggagagc
actgtgatgcacaaattcagcctccccggtgttttcatcgttcgagtggagtgcaatacc
agtgactggcatgttacagctcagaaagccataaccattcaggagcccattagagacttt
ggtgtcattaagtgctatagcagtaatatgtcaacagatggcactaaatgcaatgcactt
catggtgggcctcttcagatccaggttacggtagaggcaggtacaaatgtttcctacaca
tttcaacatgaaggccatttggttgcaaaatcctcagcggagagaggaatcacaccacac
aacattacactgagtgcaagtgtggtggaagagcttggacatggctgccacaacctgact
gtaactgcctctaacagggtcacagcacacacggtatccactgatctggagctgtgtctg
ctggagcccgttgaaggcctgcaggcctcggtgatagcagaagaagacacgtgtccagac
tcaaatgatctcatcattggtgtttcgttggacaaaggagcccctgtggagctgctcttt
aatctgactggaggcagggacacactctccgagaccagacacattctcaatggcagctta
caagcttatacattctccagcccacttaaaggaccgttgaaggtgaatatgcgagccgca
aatgccatctctgcctctgatgtagacgtgaactttgagaacatactttgggcttgccag
aatgactctgactactcaccagataaacatcaaaacacaacaggtggtgtaagtatagac
gacttgaaaataactgctactccagacactttgtttgactacacccaaagtgtcaaactg
agcgtaattggaactgaatcattgtccagcaaaggactcacatttgaatggagatgtgaa
ggaaactgcaaatgcacaaacaaaacaaaggatcaaactcatgtcattgaaaaagattgc
cttccaaatccctttgatattttcaattacactgtaactgtgagcagaagaacctggttt
agggaatgggttgatcttgcttctgcttcaaagtgcgtcactgtgactccaaaagaattc
acagatgtcaccatcagttgtcacgattgtgcttcaattaatgtcaacgaccatgtaaaa
ctcagactgagctgtgtgacaacttgcccagatgttgtttggtatattgaggacctcaaa
cctttgacggatgatctcaaaaaatgttactccgaagcaggaagaaggccacctattgag
aggcaggatggcaacactgaatatgttgtacatagccagcatctgaaagtttcaagggat
acattacacaacatcagtgtggttgcttatggaaaaagtgtaccaggttttgccaagtac
acttttccaataccaggtgctgagccaactgaaccagcagcaactgatgctcctgcagag
cccagacccccctcatgtagcgtctctccaccgtcaggaacggttctcgatgcttttgac
atcacctgcaaagcaagctctttctgctctacaggctgtttgtattgcttcaaaacagac
acaggcaaacatctgcgctgcagtaatgcaaatgaggtgaaatcggtctttctgcctgtc
ggtgacaagaacaacaattacagtttgtctgttgtagtgacagtgaaaaatgaatatgag
aaagccaccacaactgtctccactcaggtacgaaaaagcagctccagtacaactgtggag
gctctccaatctgcagtggaggatactgtgagtcagttagagcagcagggtcttctctct
ggggagacactcggacaaatgttttcttcagtttctgatatgctgaataccgaagaccgc
caagatcagaaggatgcaaggacaaagctcagaaagcaaatgctgaccaaaatgaccaca
attctgctggactcacccaccaacacgtctcaggaagtgcaagtgacggccagagctgtg
gccggactcacgcagcgtgctgacgagctcagtctggctgctcaagaggaagcgggttca
ttgttggtagacctcagctccttcctcaacactatcagtgttagtcaggaggatggagat
gacggagaagtggcgcaagcagctacaccaatagttgaagcagccagtaatattttgaat
gcctcatcaaatgaaaaagtctcagattttcttcttactggaataagcaatgttcaaagt
gccttgctgaataataaaaagctggatggagaacctgccatcattgattctggtcagatc
agtgtgtatgttaacagagtgtctccagaaaagatgcaaatgcaggatataaatgtccag
aaaaacagctcatccagattttcctttccctcactgccggctcatgttgtctctccagag
gatccagtggatgttagaatgatgagttttgagaagaacccgtattcttggaaggaggaa
aacatcacaggaactgtaggatctgtctctctcaccagagtgaacggcactgtcattact
gtagagaacttacctgatgagattgagatcctcctacccaggcatgatgttgggcaggag
aacagaacagtcctggacctggccaatttcagcacattaataattaacgttccctctccg
gatgtaacactggtgctgaaaattgacccgtctgaaaacatctccttcatgctattcctg
ggatataaagattatccaaatgatgtcaattatgtagccaagactcagatccctctcttg
aatgccaaagaagaggaaaaatacacatgggtgctgcgtcccaaagacagaacaggagaa
gttggagagcactaccttgtcatgaagcccattgttgagccaggcgtcaaatccgtcaat
gccactgtcactgtcatttctatcgctgcccagtgcaaatactggaatgaaacagaatct
tcttggagtgaagatggctgcagggtcggtccgctcaccacgcctctggtcacccagtgc
ctctgtaaccacttaactttctttggcagctctttctttgtcatgccaaacttggtggac
gtgtcacgcactgcagaactttttgctacatttactaacaatcctgtggtggtgtgtttc
gttggggccatctttgctgcttatctcctggtggttgtgtgggcacgcaggaaagacatc
caggactccgctaaggtcaagataacagtgcttgaggataatgaccgcttggctgagtat
cattacatgctgaacatcagcacagggcatcggcatggtgcatctacatcatctcaggtg
acgataaccctgctgggcacagagggagaaagtgaaccccatcacctgacggaccctgag
aagccagtgtttgagaggggcggggtggacatgttcctgctgaccacacacttttcgctt
ggagatctgcagagcatcaggctgtggcatgacaactctggagctcaccctgcatggtat
gtcaacaaagtaatggtgcaggatctggaaagttttcaaaaatggcacttcctgtgtaac
tcctggctggctgtagatgtgggagagtgcactttggacaaggtcttcccagtagccacg
gagacggatttgaaaaggtttagtaacctgttcttcatgaagacagccaaggatttccag
gatggccacatctggttttctgtcataagtcggcctccctgcagcacgttcacacgtgtg
cagcgagtgtcctgctgtttttccctgctgctgtgcaccatgctgaccagcatcatgttt
tggggcatccccactgacccctctgagcagacaatggacctgggtcacatcgagttcacc
tggcaacaggttatgattggccttcaaagttcaatcatcatgtttcccatcaatctcctt
atcgtgagtatcttcagaaacactcgtcctcgagagagggggtccaaaacagacacatcc
aaacaaggaaagactggtcgagtttctccctcgcagacgctttcccctcagaaagagctt
aaagatatcacaccagacactgtgctcaaggacataaggagaattgctcagtcactctca
aaggccatgaagaatccactgcctcacttggagctccggcctgggcagcaggcagacatc
aacactctgctgtctctggtggaggacatcattagacaccagagccgtgcggctggagac
ttctacactgacgcctccaagagggatggctcaatgattcttagtttacgtgcagttaat
ctacaagaaaacagtgtgtggacaagccctgagaagtcttcagatgagtttcagaagaag
agcagcaacaacagtcgattcctctacaagcagctgcgtcatgttgagaaggagctgggt
ttgttgggaccttctcgttttccaaacccagacagctacaaccgagccatgcagcaagtt
cagggaatgaagggtcttctggagttccaccttccctcgtccagcctggaaggtgaccag
ctggaccgcagccccagtccagaagagagcatcatcagagactccaccaagaagtgctgt
cgtggagggctgccgtggtggtttgtgtttgttggctggatactggtgatcgcaaccagc
ggtgtgtcagggtacttcaccatgatgtatgggctgacgtatgggaaagaccgctctata
ggctggctgatctccatggtggtctccttcttcgagagtctctttataactcaacctctg
aaggttctaggttttgcagctttctttgctcttgttctgaagaatgttgaccaggaggag
tatggagagcctcagatagatgagagtctgagaaacacagatgatcccgatgcagtgcgc
gcagcaagaagagacagcacatgtagtttctatcagcctccacctcccactgacattgag
aggataaggaacaatatgattaaagaacagaaggtcttcgccctcataagggagattctt
gcctacatgggatttatgtggatgttgctgctggtggcatatggtcagagagatcccaac
gcttactttctgacccaacacattcgacagagcttcagcaaagggatctcagacagcatg
agtattcaggatgtgttcaactgggcgaacacaactctgctgagcaacctgtttggagag
cacccaggattcatcacagatggaaactccaagctggtgggtaacgctcgtcttcgccaa
gtgagggtgcatcaaaactcgtgccttgtggctccctccatgcagcagtctcagcgcgac
tgtcatgctctgtactcatgggagttggaggacatggactcctacagtccaggctggagc
cgctccctgggtgataacgcctcgctgaaccttcaaagcccatggatgtaccagtcccag
ggtaaactgagggctttccctatctggggcagcgtgatgctctacagaggaggagggttt
gtggtggatctggggccagatatacataattctagaagatcccttcagtacctttatgac
aacacctggtttgatgtgtacacccaagcggtctttgttgagttcactgtgtacaatgcc
aacatcaacctcttttgcattgtcactctcatgctagagaccacagccattggagctttc
cagttccgcagtgagctgcagggtgtgcgtctttaccagtcaaccggtggcctccatatt
tttgttatggcctctgaagccatctacttcctcttcatcatctattacatgtttgtccag
ggaaagctgattaagcagcagagatcggcttatttcaagagtaagtggaacctgctcgaa
ctggcgattatcatcctcagctggagcgcgctgtctgtcttcatcaagaggactttactg
ggaaagcgggacatagagtactaccaaaacaacaaagaccaatacgccagtttccatgaa
acggccaaggctgatgcggtgctggggtatctgattgccttcctggtgctgctggctaca
gtcaaactgtggcacctgctgagactgaacccgaagctacacatgatcacagccacgctg
cagcgagcctggaatgatatctcaggctttctgctggtcatgaccatcatgtttctggcc
tactccatcgcttctaaccttatgtatgggtggaagctgtactcttatcggacactgctg
gatgctgcacagaccatggtcagcctacagcttggcatttttaactatgaagaggttctg
aattacaatcctgtgcttggagctttcctcattggctcctgcattgtgttcatgaccttt
gtggtgctcaacctcttcatctcagtcattctggtggcattcagtcaagagcagatctat
cacaagccatcagaagaggaagagattgtggacttgatgctgatgaaactcttctgtttg
tttggaattaaatgtaagaaacaaggtggcgaacgcctcactgagggcccagttgtttca
tctgcttcaaataatggactcttaacgatttcttctggggatctgtcagagggttga
DBGET
integrated database retrieval system
