Etheostoma cragini (Arkansas darter): 117945173
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Entry
117945173 CDS
T07493
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03013
Nucleocytoplasmic transport
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117945173 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
117945173 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117945173 (thoc5)
03041 Spliceosome [BR:
ecra03041
]
117945173 (thoc5)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117945173 (thoc5)
Spliceosome [BR:
ecra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117945173 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
DUF8156
DUF2542
Motif
Other DBs
NCBI-GeneID:
117945173
NCBI-ProteinID:
XP_034728365
LinkDB
All DBs
Position
5:13424372..13430803
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AA seq
684 aa
AA seq
DB search
MSADALKKRKSKVLRSEGGTPEMKRGRGEGDPQDLRVYSEEVELDSRDPEQDFLQYKESC
ESLATLMSEIQELKANGAKEGCAEVEQRRMQSCIHFMNLKKLNRLAHMRLKRGRDQTHEA
KQRVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSEEAFYQEAPQEISRPHIT
KNDPHQLTLARLDWELEQRKRLAEEYKESQATKEKIHKSIEVKKEHLTSLQPGLNAIMQA
SLPVQEYLAMPFERAQIQTEVARHLPPPLYVLFVQANAYGQACDKNLSVSMSGDVDEAKA
LSKPPEDSQDDESDSDAEEEQEKTKRRRPTTGGQLDEKRREMLKRHPLSLCLDLKCKDGS
ILHLFFYYLMNLNIITVKTKVSTSTELNSAISAGDLLKPDTLLSCLYACDQGRETPNPAN
RYQFDKVGIVSFADYLEELGHPYMWVQSLGGLHFPRDPSEIVHVGSSLSASHMETTMKLL
RGRLQSRLALHKQFASLEHSIIPVSSECQHLFPAKVLSRLARWTTTTQQEYMDLPYTRHV
TDAGMAKETDMYFIAVLERGTAHLQAAVVLNPRYPEIAPLFSLSLSWKGERSGRTDDNLR
AMESEVNVFKKELQGPRPGHQLLTNQISRLCVCLDVYLETEGQDDSVEGPREFPREKMCL
RTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgacgccctgaagaagagaaagtctaaggttctccgcagtgaaggaggaacc
ccggagatgaagcgaggtcgcggggaaggagacccgcaggatttgcgagtatatagtgag
gaagtggagctggacagcagggaccctgagcaggacttcctgcagtacaaagagtcatgc
gagagtttggccacactcatgagtgagatccaggagctgaaagcgaatggagccaaggag
gggtgtgctgaggtcgagcagagacgtatgcagagctgcatccacttcatgaatctgaaa
aaactcaatcgtctggcacacatgcgactaaagagaggcagagaccagacacacgaggcg
aagcagagggtggatgtgctgcaccttcagttacagaacctgctgtatgaagttatgcat
cttcagaaggagatcagcaagtgtctggagttcaagtctaagcatgaggagatagacttg
gtgtctgaggaagcgttttaccaggaggcgccacaggagatttccaggcctcacatcaca
aaaaatgatccccaccagctcacactggcacgactggactgggagcttgaacagaggaag
aggttggcagaggaatacaaggagtcccaggccacaaaggagaagatccataagagcatc
gaggtgaagaaggaacatctgacaagcttgcagccaggactcaacgccatcatgcaggcc
tctctcccagtgcaggagtatctggccatgccctttgagcgggctcagatacagacagag
gttgcccgccacctgcctccacctctatatgtcctgtttgttcaagccaatgcctacggc
caggcctgtgacaagaacctgagtgtctcaatgagcggtgatgtggacgaggccaaggcc
ctgtccaaacctccagaagactcccaggatgacgagagtgactctgatgcagaagaggag
caagagaaaacgaagagaagaaggccaactacaggtggccagctggatgaaaaaagacgg
gagatgctgaaaaggcaccctctgtctctctgcttagacctcaagtgtaaagatggcagc
atcctccatctcttcttctactacctgatgaatctcaacatcataacagtcaagaccaag
gtctccacctccacagaactcaactcagccatcagcgcaggggacctgctgaaaccagac
actctactcagctgtctctatgcctgcgaccagggacgagaaacgcccaatccagctaat
cgctaccagtttgataaagtcgggattgtttcctttgctgattatttggaggagctgggc
catccctacatgtgggttcagagtctaggaggactacattttcccagagatccttcagag
attgtgcatgtgggcagttctctgagtgccagccacatggagaccaccatgaagctgctg
aggggacgactccagtctcgcttggctttgcacaaacagtttgcctctttagagcacagc
atcatcccagtctccagtgagtgtcagcacctctttcctgccaaggtcctctcccgttta
gctcgctggaccactaccactcagcaggagtacatggatctgccatatactcgacatgtg
actgatgctggcatggcaaaggagacggatatgtacttcatagctgtgttggaaaggggc
acagctcatctacaggccgctgttgtgctgaatccccgctaccctgaaatcgctcctctc
ttctcactgtcgctcagctggaagggagagcgcagtggacgcactgatgacaaccttcga
gccatggagagtgaggtcaatgtgttcaaaaaggaactacaggggccacgtccaggacac
cagctcctgaccaatcaaatttcacgcctttgtgtctgcctggatgtttatttggagaca
gaaggacaagatgacagcgtggagggaccacgagagtttcccagagaaaagatgtgcctg
cgcactgtcaggggtccaaatcgtctgaagccattcaagtacaaccaccctcagggcttc
ttcagtcaccgctag
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integrated database retrieval system
