Etheostoma cragini (Arkansas darter): 117945473
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Entry
117945473 CDS
T07493
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04142
Lysosome
ecra04144
Endocytosis
ecra05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117945473 (cltcl1)
04142 Lysosome
117945473 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117945473 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117945473 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117945473 (cltcl1)
Membrane trafficking [BR:
ecra04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
117945473 (cltcl1)
Exosome [BR:
ecra04147
]
Exosomal proteins
Proteins found in most exosomes
117945473 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
LVIVD
Gp18_dom_I
capSnatchArena
Motif
Other DBs
NCBI-GeneID:
117945473
NCBI-ProteinID:
XP_034728859
LinkDB
All DBs
Position
5:20625462..20654330
Genome browser
AA seq
1685 aa
AA seq
DB search
MAQILPIRFQEHLQLQNMGVNPANIGFSYLTLESDKFICIREKVGDQNQVVIVDLSDPTN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKVKAHTMTEEVMFWKWISVNTV
ALVTDTAVFHWSMEGDSQPTKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFGEFKVEGNAKPSTLFCFAVRSQAGGKLHIIEVGQPAAG
NQPFAKKAVDVFFPPEAQTDFPVAMQIGNKHGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPHEATSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLAG
AEEIFARKFNTLFAQGSYSESAKIAASAPKGILRTAETIRRFQSVPAQPGQASPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFAQMLVQD
EEPLANINQIVDVFMEGNLIQQCTSFLLDALKNNRPAEGHLHTRLLEMNLIHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQLCVQIASKYHEQLGTEALVELFESFKSYEGLFYFLGSIV
NFSQELDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNSLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQ
FSTDELVEEVEKRNRLKLLLPWLESRIHDGCEEPATHNALAKIYIDSNNTPERFLKENTF
YESAVVGKYCEKRDPHLACVAYERGQCDLELIKVCNENSLFKSEARYLVRRKDPELWANV
LEENNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQRDLVKEAIDSYIKAVDPSAYME
VVNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTHRLAELEEFVSGPNNAHIQ
QVGDRCYDEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFA
CVDGEEFRLAQICGLHIVIHADELEDLISYYQDRGYFEELITLLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEFDNAAITMM
SHPTDAWKEGLFKDIIAKVANVELYYKCLSFYLEYKPLFLNDLLTILSPRLDHSRAVTFF
SKVNQLKLIKPYLRSVQNHNNKSVNEALNNLLTEEEDYQGLRASIDAYDNFDTIGLAQRL
EKHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYVAESKDAELAETLLQWFLE
EGRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVDEFAAKVTV
DKLEEADSQRKTEEEVTEPQPIVFGQQLMLPASPAPVAPQPAYPGYGYPAAPVGFPAQPV
YGFNM
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagttgcagaacatgggcgtg
aacccagccaacattgggttcagctatctgaccctggagtcggacaaattcatctgcatc
agagagaaggtgggcgatcagaaccaggtggtgattgtggatctatctgaccccaccaac
ccaatcaggagaccgatctctgccgacagtgccatcatgaatcccgccagcaaggtcatt
gcgctgaaagacgctgccaagacgctgcagatcttcaacattgagatgaagagtaaggtg
aaggctcacactatgacagaggaggtcatgttctggaagtggatatcggtaaacactgtt
gccctggtgacagatacagctgtctttcactggagcatggagggggattcccaacccacc
aaagtgtttgatcggcacgctagtctggcgggatgtcagatcatcaactacagaactgac
gaacaacagaagtggctactgttgataggaatttctgcacagcaaaaccgtgtggttggg
gcgatgcagctgtattctgttgacaggaaagtgtcccagccaattgagggccacgccgct
gcctttggggagttcaaagtggagggaaatgccaaaccctccaccctcttctgctttgct
gtgcgctcacaggctgggggaaagttgcatattattgaagttggtcagccagctgcagga
aaccagccatttgctaagaaagcagtggatgtgttcttccctccagaggctcagacagac
tttcctgtagctatgcagattggcaataagcatggtgtgatatatttgatcacaaagtat
gggtacattcacctgtatgacctggagtctggagtttgcatctacatgaaccgaatcagt
gcagagaccatctttgtaaccgcccctcatgaagccacctctggaattattggggtcaac
aagaagggacaggtgttgtcagtgtgtgttgaggaggaaaacattgtcaattatgccacc
aacgtcctgcagaaccctgatctagccttgaggatggctgtgaggtcaaaccttgcaggg
gctgaggagatttttgccaggaagttcaacactctcttcgcccagggaagttattcagaa
tctgcaaagattgctgcatcagcacccaagggtatccttcggacggcagaaaccatccgt
aggtttcagagtgtcccggcccagccaggtcaggcctctcccctgttgcagtactttggt
attctgttggaccagggccagcttaacaagtttgagtctctggagctgtgcaggcctgtc
ctgcagcagggccgcaagcaactactggagaaatggcttaaggaggacaagctggagtgc
tcagaggagctgggagacctggtgaaggcctctgaccccaccctcgctcttagtgtgtac
ctcagagctaatgtgcccaacaaggtcatccagtgcttcgctgagaccggccagttccag
aagatagtgctgtatgctaaaaaggttggctacaccccagactgggtgtttttgctgaga
aatgtaatgcgtgtcagtccagaccagggactgcagtttgcccagatgttggtccaggat
gaggagccgctggccaacatcaaccagattgtagatgtattcatggagggcaacctgatc
cagcagtgcacctccttcctcttagatgctctaaagaacaaccgcccagccgaaggacac
ttacatacacgtctgcttgagatgaacctcatacatgccccccaggtagcagatgcaatc
ctggggaaccagatgtttacacactatgaccgtgcccacgttgctcagctgtgtgagaag
gcaggtctgctgcagagagctcttgaacactacaccgatctgtatgatatcaaacgagcc
gtggtgcacacacatctgctcaaccctgagtggctggtgaacttctttggctctttatca
gtagaagactcgttggagtgtttaagggccatgttgtcggctaacatcaggcagaacctg
cagctgtgtgtccagatagcatctaagtatcatgagcagctggggactgaggcattagtg
gagctctttgaatccttcaagagttatgagggcttgttttacttcctcgggtcgattgtg
aatttcagtcaggagcttgacgttcactttaagtacatccaggctgcctgcaaaactggc
cagatcaaagaagtggagagaatatgtagagagagcaactgctacgacccagagagggtt
aaaaacttcctcaaggaggccaagctaacagaccagcttcctctcatcattgtgtgtgat
cgctttgactttgtccatgacctagtgctctacctctaccgcaacagtctacagaaatac
attgaaatatacgtacagaaagtgaaccccagccgtttaccggtggtgataggcggcctg
ttggatgttgactgtgctgaggatgtcatcaagaacctgatcatggtggtcagagggcag
ttttccactgatgagttggtggaggaggtagagaaaaggaacaggttaaaacttctattg
ccatggctggagtcccgtatccatgatggatgtgaggagccggcgacccacaatgccctg
gccaagatctacattgatagcaacaacacacccgaacgcttcctgaaggagaacacgttc
tacgagagcgctgtggtcggaaaatactgcgagaaaagagatccccacctggcctgtgtg
gcttatgagagaggacagtgtgacctggagctcatcaaagtgtgcaatgaaaactcttta
ttcaagagtgaggctcgatatcttgtgcgacggaaagatccagagctttgggcgaatgtg
ttagaagaaaacaaccctttcagaagaccactcatcgaccaggtggtgcagacagcactg
tcagagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcggac
ctgcccaacgagctgattgaactgctggagaagattgtacttgataactctgtcttcagt
gaacacagaaacctccagaacctgctgattttgactgccatcaaggccgaccgcactcgt
gttatggagtacattaacaggctagacaactacgacgctccagacatcgctaatattgcc
atcagcaatgagctctttgaagaagcgttcgccattttcaagaagtttgatgtcaacacc
tcagccatacaggtattgatagagcacatagggaacttagatcgtgcctatgagtttgcc
gagcgctgtaatgaacctgcggtgtggagccagttagccagagctcagcttcaaagagac
ctggtcaaggaggccattgactcgtatatcaaagccgttgacccttcagcgtacatggaa
gtggtcaacgcagccagcaagaacaataactgggaagacttggttaaattccttcagatg
gctcgaaagaaagcgagagagtcttacgtggagacagagctgatctttgctttagctaaa
acccaccgtctggctgagctggaagagtttgtcagtgggcccaacaatgctcacatacag
caggtgggcgatagatgttatgatgagggaatgtatgaagcagccaagctcttgtacaac
aatgtgtctaactttgctcgcctcgcatccacactagtccacctcggagagtaccaggca
gctgtggacagcgccaggaaagccaacagcacacgtacatggaaagaggtgtgttttgca
tgtgtggatggcgaggagtttcgattggcacaaatctgcggtcttcacatagtgatccac
gccgacgagctggaggacctcatcagctactatcaggaccgcgggtactttgaggaactc
attactctgctggaggcggcactgggtctggagagggcccacatgggcatgttcaccgag
ctcgccatcctctactcaaagttcaagcctcagaagatgagggagcacctggagcttttc
tggtccagagttaacatcccaaaggttcttcgtgcagcggaacagtctcatctttgggca
gagctggttttcctctacgataaatacgaggagtttgacaacgctgccatcacaatgatg
tctcatccgacagatgcttggaaagaagggctgttcaaggacattattgccaaggttgcc
aatgtggagttgtactataaatgtctttccttctacctggaatacaaacccctctttctg
aatgacctgttgaccattctgtctccgcggttggaccacagccgagctgtcacatttttc
agcaaggtgaaccagctgaaattaatcaagccttacctgaggtctgtccagaatcacaac
aacaagtccgtcaacgaagccctcaacaacctgcttacagaggaggaagactatcagggc
ctcagagcatccatcgatgcctatgacaactttgacaccattggccttgcgcagaggtta
gagaaacatgaactgattgagttcagacgcattgctgcctacctgtacaagggcaacaac
cgctggagacagagtgtagagctctgcaagaaggacaaactctacaaggatgcaatgctg
tacgttgcagagtctaaggatgcagagctggcagagactctgctccagtggttcctggag
gagggcaggaaggagtgcttcgctgcctgcctgttcgcctcatatgacctgctgcaccct
gatgtggtgctggagctggcctggaggcacaacatcatggactttgccatgccatacttt
atccaggtcatgagagagtacctgacaaaggttgatgagtttgcagcgaaggtgacggtg
gacaaactggaggaggcagacagccagaggaaaactgaagaggaggtgacagagcctcag
ccgatagtgtttggccagcagctgatgttgcctgcctctcctgctccagtggctccacaa
ccagcatacccgggctacggctaccccgccgcccctgtgggcttccccgctcagcccgtt
tatggcttcaacatgtag
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integrated database retrieval system
