Etheostoma cragini (Arkansas darter): 117945631
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Entry
117945631 CDS
T07493
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117945631 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117945631 (ddx61)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117945631 (ddx61)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117945631 (ddx61)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117945631 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
117945631 (ddx61)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117945631 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
117945631
NCBI-ProteinID:
XP_034729134
LinkDB
All DBs
Position
6:20284750..20298591
Genome browser
AA seq
485 aa
AA seq
DB search
MATARTANPAQMIGLNKPANGQLRGQASLLAAAQQPSVPQKRTSIPQSSGGIKFGDDWKK
CLELPPKDTRMRTADVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIALSGR
DILARAKNGTGKSGAYLIPLLERIDLKKDHIQAIVMVPTRELALQVSQISIQLSKHLGGV
KVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKMDKAQLIVMDEADKLLSQ
DFVVLIEDIISFMPKDRQILLYSATFPISVQKFMNKHLKKPYEINLMEELTLKGITQYYA
YVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYRN
RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLA
INLITSEDRYNLKNIEDQLVTDIKPIPSSIDKSLYVAEFHSVDPDDDENDYDDHGRAKKK
ELGGI
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagcaaacccagcacagatgattggattgaacaaaccagcaaat
gggcaactcagaggacaggcatcacttcttgcagctgcccaacagcccagtgtcccccag
aaaaggaccagcattccgcaaagcagtgggggcatcaagttcggggatgactggaagaag
tgcctggagcttcctccaaaagacaccaggatgagaaccgcggatgtgacatcaactaag
ggaaatgaatttgaagactactgcctaaaacgggaactgctaatgggaatctttgaaatg
ggatgggagaaaccatcccctgtccaggaggagagcatccccatcgctttgtcaggcaga
gatattttggcccgggccaagaatggcacggggaaaagtggagcctacctcatccctctt
ctggagaggatagacctgaagaaggatcacatacaggccatagttatggtgccaacaaga
gagttggccctgcaagtgagccagatcagcattcagctcagtaagcacctaggaggggtt
aaggtcatggctaccacgggtggtaccaacttgagggatgacatcatgcgtcttgatgag
acagtgcatgtagtgattgctacaccaggcaggatactagacctaatcaagaagggtgtg
gcaaaaatggataaagcccaactgattgtgatggatgaagcagataaactgctgtcccag
gactttgtggtcctgattgaagacataatcagcttcatgccgaaggaccgtcagatcctg
ctttactctgccactttcccaatcagtgtgcaaaagtttatgaacaaacacctgaagaag
ccttatgagatcaacttgatggaagaactgaccttgaagggcattactcagtactatgcc
tatgtgactgaaagacagaaggtccattgtctcaacacacttttttctaggcttcagatc
aatcaatctatcatcttctgtaactccacccagagagttgagcttctggccaagaaaatc
acccaactgggttattcatgcttctacattcatgcaaagatgatgcaggaatacaggaac
cgtgtgttccacgacttcaggaatggattgtgcagaaacttggtctgcacagacctattc
actcggggaattgacattcaggcagtaaatgtggtcatcaactttgacttccccaaaaat
gcagagacctacctgcaccgcataggcagatcagggcgttttggtcatctgggtctggcc
atcaatctgatcacttcagaggaccgctacaacctgaagaacattgaggatcagcttgtc
actgatataaagcccatccccagcagcattgataagagcctgtatgtggcagagtttcac
tctgttgacccagatgatgacgagaatgactatgatgaccacggtcgagccaaaaagaag
gaattgggaggaatctga
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