Etheostoma cragini (Arkansas darter): 117945828
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Entry
117945828 CDS
T07493
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117945828 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117945828 (smarcc1a)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117945828 (smarcc1a)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117945828 (smarcc1a)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117945828 (smarcc1a)
PBAF complex
117945828 (smarcc1a)
GBAF(ncBAF) complex
117945828 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Chromo
DUF919
Motif
Other DBs
NCBI-GeneID:
117945828
NCBI-ProteinID:
XP_034729426
LinkDB
All DBs
Position
6:25943514..25972212
Genome browser
AA seq
1127 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGTAVGRKKDGGPSTKFWESSDTISQLETVRQWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAAGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQHEEEEWLRPVMKKDKQVLVHWGVSPDSYDTW
VSANEVDGDVEDPPNTDRPWKVHAKWVLDTDSFNEWMNEEDYEVDENKKPVSFRQRIFPK
EEESSRTPDRKERKANSASKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKQRRGHRGEEE
DTEEDVTKDMDDSSAGASMEEGSMSKNANSKKDCESTPVKGGNGADLDDMEDDSVLSGGK
DDEEQSKADINRLMDASEDNVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDS
ESRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQPPMPNFADKGKDKAIDLQNFGL
RSDLYNKKNLKGKAANSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFL
RLPIEDPYMESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEF
SRVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETPEAEKID
TDTDSQQADKAELKDEAEKPSESAEKSDKIEATEKVKKEGSEASERDEESEEGGEAKTAS
ADKDKDEAMETSSSEQEKDKEEKAATEEGDEKRKKLEHDIGEGNIATAAAAALASAATKA
KHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQA
FHMEQLKYAEMKARQQMEQQAAAAAAAAQAQGQGQAPGSGPHSGPPPSGMHPGGPLPHHG
APVPYHGGPPPGAAMHPGYPPMGHHPMAPHHPGQTGPMGPGQPIQGRMMPGPPSAAPPPG
GMPPMMPPRHSGAPNGMYPGPQPAQPEAVPQVPVGPPAPASGRVAEN
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggcccg
gtcggcggcggaacggcagtgggacgaaagaaggacggtggtccttccacgaaattctgg
gaaagttcagacacgatttcccagctcgagactgtgcggcagtggatcggaaagcactac
aagaagtatgtccagaatgactccccctccagtaaatccttggcgggcctggtggtccaa
ctgctgcaattccaggaggacgcatttggacgcagggtcaacaatcctgctcttaccaag
ctacctgccaagtgtttcctggatttcaaggcagcaggtgctctctgtcacatcttgggt
tcggtgtacaagtttaagagtgagcaggggtggcgtagatttgacctgcagaacccttcc
cggatggacaggaacgttgaaatgttcttaaatgtagagaagaacttggtccagaacaac
tgcttgactcgacccactgtcttcctgtcgccggacattgagcagaaacaagccagtaag
ctcaaagacatcatcaaaaggcaccagggctccattactgatgacaagtcaaaggccacc
caccacatctacccctctccatcccaacatgaagaagaggaatggcttcgccctgtcatg
aagaaagacaagcaggtgctggttcactggggtgtgtccccagacagctatgatacctgg
gtgtcagccaacgaggtggatggggatgtggaggacccccccaacaccgaccgaccatgg
aaggtccatgccaagtgggttttagacaccgattcctttaatgagtggatgaatgaagaa
gactatgaggtagacgagaacaagaagccagtcagcttccgccagaggatcttccccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaactctgccagcaag
aagaggaggcgctcgccctcgccacccagcactccggccgagtcccgcaagaagggagga
aaaaaggggaacccgggtcctcactggaagcagcggcggggccacagaggcgaagaggaa
gacacagaggaggacgtaaccaaggacatggatgactcctcagctggtgccagcatggag
gagggcagcatgtccaaaaatgctaattcaaagaaagactgtgagagtactccagtgaaa
ggagggaatggggccgacttggatgacatggaggacgactctgtgctgtctggtggaaag
gatgatgaggaacagagcaaagctgacatcaaccgactgatggacgctagcgaggacaat
gtgactgaacagactcaccacatcataatacccagctacggtgcttggtttgactacaac
tgcatccatgagattgagagaagagctttgcctgaattcttcaatggaaagaacaagtcc
aaaactccagagatatacctggcctatcgcaacttcatgattgacacttatcggctaaac
cctcaggagtacctcacctccacctcgtgtcgcaggaacttgactggggatgtctgtgcc
atcatgagggttcatgcatttttggagcaatggggtttggtaaactaccaggttgactct
gagagtcgccctttgcccatgggccccccacccacaccccacttcaccgtgcttgctgac
acaccatctggcctcatgcccctcaaccacagacccccaccgattccccctcaaccacca
atgcccaacttcgctgacaaaggcaaagacaaggccatcgacctgcagaactttggcctt
cgcagcgacctctacaacaagaaaaatctcaagggtaaagctgccaactctaccagggat
tggaccgagcaggagactctactgctgctggaggccctggagatgttcaaagatgactgg
aacaaagtgtctgagcacatcggttcacgcacccaggacgagtgtatcctgcatttcttg
cggctgcccattgaggatccatacatggagagcaccgaggcctctctgggtcctctggcc
taccagcctatacccttcagccagtctggaaaccccgtcatgagcacagtagccttcctg
gcctctgtggtcgatcccagagtggcgtctgctgctgccagggcagccctagaggagttc
tcccgcgtccgtgaggaggtgccggctgagttggtggaggctcacgtgaagaaggtgcag
gaagcagccaggagcacaggaaaggtggaccccgcctttggtctggagagcagtggcatc
gctggcaccgcccctgaggagccagaaaagaccgaaaccccagaggcagagaagatagac
acggacacagactcccagcaggctgataaggcggagttaaaggacgaggcagagaagccc
agcgagtctgcggagaagagcgacaagatagaggccacagaaaaggtgaagaaggaggga
tctgaggcgtcggagcgcgatgaggagagtgaagagggaggggaggccaagacggcttca
gcagacaaagacaaagacgaggctatggagacatcgtcctcagaacaggagaaggataag
gaagagaaggcagctacagaggagggagatgagaagaggaagaaactggagcatgacatt
ggagaggggaacattgccaccgcagctgctgctgccttggcatctgctgccaccaaggcc
aagcacttggcagccgtggaggagaggaagatcaagtccctggtggctctgttggtggag
acccagatgaagaagttggagatcaagctgaggcactttgaggagctcgagaccatcatg
gaccgagagaaagaggctttggagcttcagcgacagcagctgctcactgagcgacaggcg
ttccacatggagcagctcaaatatgccgagatgaaggcgaggcagcagatggagcagcaa
gccgctgccgctgccgctgctgctcaggctcaaggacaggggcaggctcctggatctgga
ccccactctgggccccctccatcaggcatgcaccctggagggccactgccacaccacggt
gcgccagtgccctaccacggagggccaccacctggtgctgccatgcacccaggctaccca
ccgatgggtcaccaccccatggcccctcaccacccaggacagacaggaccaatgggaccg
ggccagcccatacagggacgtatgatgcccggcccaccctctgccgcccccccacctggt
ggcatgcctcctatgatgcccccacgtcactctggagcacccaacggcatgtaccctggc
ccacaacctgcacagcctgaagcggtacctcaagttcctgtgggtcctccagcgcctgcg
agtggccgagtggctgaaaactaa
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integrated database retrieval system
