Etheostoma cragini (Arkansas darter): 117945889
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Entry
117945889 CDS
T07493
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117945889 (prdm1a)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117945889 (prdm1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
PRDM2_PR
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-met
B129_C2H2-zf
zf-C2HE
SCIMP
Zn_ribbon_8
STL11_N
Motif
Other DBs
NCBI-GeneID:
117945889
NCBI-ProteinID:
XP_034729512
LinkDB
All DBs
Position
6:27021809..27032796
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AA seq
820 aa
AA seq
DB search
MCGWDQSYTATSHSSAMLTSEGAHTMEQDDTHTGAKMASTATTTTTTSSAAAHTLADTDV
DMDVDMEDADMTQWTEPEFEEKCTYIVKDTPWEAGQDGDAVTTTTTRAEASLPRNLVFKY
PADSKEVVGVCSREYIPKGTRFGPLVGEIYTADSVPKDANRKYFWRVSTRKGKHTHTDTH
TLPQKPEGPLPVTSHASKVSQWNRKLGSLFFCVCVCSLDGDTEQSMLEVKQQQVSSEERL
VEACSPSPVAVTPTPPKREHSVLSILRGTNSTSSIKREPSRPLPTRPRCADSPERLLYPH
AFYPALRPHPHIPEDFLGHKSGQLGYPATRSPGNQSSATPSPSARSSPDSSPQGSPLGPS
PSSASYYPAGLGSYPGYSPPPTPLSSSFYPPGAPYSRYILPHHYPLPGGGVPTVGGIFPR
LYPIYRGLLPPHVPLHPSDTAGRHFLMPDHVHPSPISAHRDFLLPRPASAFSAATSLKDK
AGPHHPYQGHPHPHRPTHAPSSGSPTAGTAPLSERVPTKPSSALLGNASEHCSDEEAINL
IKVKRGPGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPFKCQT
CNKGFTQLAHLQKHFLVHTGEKPHECPVCHKRFSSTSNLKTHLRLHSGEKPYHCKLCPAK
FTQFVHLKLHKRLHSRERPHKCSHCHRHYIHMCSLRLHLKGYCPAVSGQVALEEVQRANE
EIERFDVSEHAEQLEQLQGGAEVEAMLEKQVLGMLWRETDLKSSRFHPHHKGCTTELMST
GYGAYESPNETSVIKMRHSSSHVPQLPANVTVKQESEDHA
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggatcaaagttacacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacaccatggagcaggacgacacgcacaccggagccaagatggcttccacc
gccaccaccaccaccaccaccagctccgccgcagcacacacgctggcagacacggacgtg
gacatggacgtggacatggaggacgcagacatgacccagtggacggagccagagtttgag
gagaagtgcacgtacatcgtcaaagacacaccgtgggaggcggggcaagacggcgacgcc
gtgacgacaacaaccaccagagctgaggcgtctctgccccgaaacctggtcttcaaatac
ccggctgacagcaaggaggtggtcggcgtgtgcagcagggagtacatccccaaaggaact
cgcttcggtcccctggtgggcgagatctacacggccgacagcgtccccaaagatgccaat
cgcaagtacttctggagggtgagtacacgcaaggggaaacacacacatacagacacacac
acacttcctcagaagccggagggaccccttcctgtgacgtcacacgcgtctaaagtcagt
cagtggaacaggaaactgggctcgctgtttttctgtgtgtgtgtgtgttcattagacggg
gatacagaacagtctatgttggaggtcaagcagcagcaggtgagcagtgaggagcgtttg
gtcgaagcctgcagcccgtcccctgttgcagtcacccctacaccgcccaagagggaacac
agtgtcctctccattctgcgtggcaccaacagcacctcgtccataaagagggagcccagc
cggccgcttcccactcgcccgcgctgcgccgacagccccgagcgccttctataccctcac
gcattctacccggctctcaggccccaccctcacatccctgaagacttccttggccacaaa
tctggccagcttggttacccagcgacacgctctcctggcaaccagtcttcagccacaccc
agtccgtcggcaaggagcagccccgacagcagtcctcaggggagccccttgggtccgtca
ccatcgtcagcttcttactaccccgccgggctgggttcttaccccggttactccccgcca
cctacccccctttcctcatccttctaccctccaggagccccctactcgcgctacatcctt
ccccatcactaccctctgcctggaggtggtgtccccaccgttggaggaatctttccaagg
ttgtaccctatctacagaggcctcctgccccctcacgtgcccctccacccttccgacaca
gcagggaggcacttcctgatgcctgaccacgtccacccctcccccatctctgcccacaga
gacttcctccttcccaggcccgccagtgccttctcagccgccacatctctgaaggacaaa
gcagggcctcaccacccttatcaagggcaccctcacccacacagacccacccacgccccc
tccagcggctccccaacagcaggcacagcccctctcagcgagcgggtgcccaccaagcct
tcctcagccctgctgggcaatgccagcgagcattgctctgatgaggaggccatcaacctg
atcaaggtgaagcgtggcccaggctcagcgggctacaaggcgctgccgtacccgctgaag
aagcagaacggcaaaatcaagtacgagtgcaacgtgtgcagcaagaccttcggacagctg
tcgaacctgaaggttcatcttcgtgttcacagtggagagaggcccttcaaatgtcagacc
tgtaacaaaggcttcacccaactggctcacctgcaaaaacacttcctggtccacacaggg
gagaagccacatgaatgtccggtatgtcacaagcgcttcagcagcaccagcaacctgaaa
actcacctgcgcctccactcgggggaaaagccctaccactgcaaactctgcccggccaaa
ttcacgcagtttgtccacctcaagctgcacaagcgactgcactcacgcgaacgtccgcac
aaatgctcccactgccaccgccactacatccacatgtgcagcctgcggcttcacctgaag
ggctactgcccggcggtctccggccaggtcgccttggaggaggtgcaacgcgccaacgag
gagattgagcgatttgacgtcagcgagcacgccgagcagctggagcagctgcagggaggc
gcagaggtggaggcaatgttggagaagcaggtcttggggatgctgtggagggagaccgac
cttaagtcttcccgcttccatccccaccacaagggttgcaccaccgagctcatgtctacg
ggttacggtgcatacgagtccccgaacgagacgtcggtcatcaagatgcggcacagcagc
agccacgtcccgcagcttcctgctaacgtcaccgtcaagcaggagtcagaggaccacgct
taa
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