Etheostoma cragini (Arkansas darter): 117946173
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Entry
117946173 CDS
T07493
Symbol
cicb
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117946173 (cicb)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117946173 (cicb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Phage_F
Motif
Other DBs
NCBI-GeneID:
117946173
NCBI-ProteinID:
XP_034729972
LinkDB
All DBs
Position
6:19686485..19722250
Genome browser
AA seq
2716 aa
AA seq
DB search
MRPSKKHRGRSSPITRGRGGRRRGGSQPLQEKDPKRVKRETLFKTTQPTPNPLTHKQTLP
TVTNSNKEPITNSNTPTVEESTELRKPVESVEMEGKKAEEKTEKDKIVGTNGNSAVATES
VAFPTSAPAPLSTATPPLATNHSPNVGSVSSRKTATFKARVPKKKYTYEHFANNANALTT
IPTSRPAHMHNSYCNINNNFKSSNNISNSINVSINISPNSNTTKDINTMTNSSAGSHDTL
INSSNSRSNNCSGNQSSVLTVDSRDTEANCFVSTENKALRAADSPQKDSQAGENESEGAP
YSVRSSSTDTASEHSADLDVMEATGQSLHQKNSDYPATHPNLHHKEASLSEGLAEVLAKG
MKNQRVLARQIKRTMESGVRATGDRGVKEINSCPLLSVFRPGVVRRVSGGSVEVQLQGEE
TLIKYPFHGGTVMTLSSGAESTVEFILDAPPPGMAPVAVRTRVCVPFGGEEGGPLLYREG
IITQVDPHPGVSFPYQVLLNEDRETLDNGGVGEEKEKRKANARTVWVSRQSLRLLTPPWE
VPHLDGGRAKEREREREREERERREEMEVEREVCQLSIGMGVLGGGARLGHSFSHEKVVG
GHPYVNAHPPPHSSTVTSSAGGSTVHGCGDNYSDRERQKQPNTPEEDVEVSCFNMTLTVD
PQPNAGTSQQINIVSRSSCYTPSSPHLALVRGLGPPHFSTLPSPQPPRSPALLVSEMNNT
TPNLPPSKTTPTQTPTPTSGGGSTSTSSRSRTPLSLAQQKYKKGDVVCTPNGIRKKFNGK
QWRRLCSREGCMKESQRRGYCSRHLSMRTKEMETAGGGGGGGSSSGTVTPDLRGRASSEF
EWDDTSRESSETGSRGDSRPRLVLPSLLPHDLSSRFDFDECEAATMLVSLGSSRSGTPSF
SPISNQSPFSPAPSPSPSPLFGFRPANFSPITASPVLQHRRHRQPSGTGGSKVTTPAGGG
ERERHTSGIQPPFHSNLMFTVPMSPSKRKPDAPPPPPLPSHHHDYTPKTEVEQGDLNNSF
RVLSPQTSVSHSRTHTPTFSRPRGVTTPSSRSSPSSTAVSPPPLLVSPTPPCPLTPDGGP
RRVVPVSQQASRDSPVIVRNPEVPLAKFTECPLGTGGGGNEGGTDTSSKDIGLTPLTPHP
ISGLQVPVPINAAAATVQNGTVVLRSPAQTLVLVSPTPSSLPTSDTPATPLQALSVTVST
TVTAPTPSSTDSSVEQEENRGTGFGGEVQQPVPCHPSPTALLPLILPAESLHPVPRKDII
MGRPGTVWTNVEPRSVPVFPWHSLVPFLAPTQSDASSQPGEGPHPVNHPHAASLKTECQG
VAAHSQEPAEAPPIVERGPPSRPPPSSDEPPPEKEKGDAEMERPDSETESDVDDPFLPGV
APEQPLSTSPVKRRTQSLSALPKDGDKSSPGKREKDHIRRPMNAFMIFSKRHRALVHQRH
PNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEGR
GVLGGKDIRERSMSESTEPHSVELKGVGPGMVGVSERSTGKGHVGQLTRPRAFSQSAMHS
LERSDRGNPQALAELAQMCGESGTQFSSHAPPLSQSQRGVSEDMTSDEERMVICEEEGDD
DVIEDPYPSSSIDLKCKERVTDSDSENGSGDESDRKRVFAPVICSSALSSSSHHTPHGRS
VSLSSYPSSKRCDEGRSGGGAFSDHRRKDRGEGKDTFGGEGGGGVQATSISLTSGHSVIS
TSPAGGHPSSSVGSLGGNPLQGIGAVRVASTVVTNVMRPVISTPLPIASKPRDGGTLSSP
HPPERKSLTPHQQPQFLIGSGSGSGVQAPSGGYYSSSSPKPLGAGVGPGGVVTNLVLGGT
LSAQPTVQLITPSHQPQPCQQQVFSSSTVSVPHSQTNGPVPLSLLHPQFLPASSLASPGG
KAITQVQYILPTLPANPKSPPQQLGQPASIFNLPTAPPTHMPLANGKHQGTSSLTGYTSS
SPVGVVNPGTRVQTQSPVLQGKMLVPMATVRTAPAPAQQFPIVAPPLPVQNGAQTGSKII
QIAPMPVVQSQLPQGGAFHPASPFPVTVGTAAVVAQGSAPSQAVLLPPAPTRISYVHSTP
GVPSTLPLVSTTTGASTTQQALPVTGSAYVPSPLATLGFTAIAPPGQTLVQPLIAGQPPL
LAPAQSPQPSISAPSSASGGQIVTAVYPPSPSVTMATGVVSMTAVPPSVVYSVSSPSSAS
PHILSKYTATPSTVTHPHPHFHLDRQADRHLPPDRPADRQADRQAERQTELLTHSDRHLE
RQASTNSSSVAPPSGSAVSIRPCSPPLQIQTPGNTPGTPKLTQLPVRTPQKVKATVANIP
VGSYEGGGRGKEREREKEREKEREREREREASATSHFSFEPEVAGQTGSPSTHPAEEPPS
SERTLEGSCVPDSSDTRHQESTSTKETGCRDSLPSSPPPPPAATEPSLPPPQTDKDGPTP
KKVKARPPPLKKTFDSVDKSGRVLSEVYFEERFAELPEFRPEEVLPSPTLQSLATSPRAI
LGSYRRKRKNSTDLDSATDEQVSPKRKSRRRSSCSSEPNTPKSAAKCEGDIFTFDRAATD
GEDILTDLEFDKVPYSSLRRTLDQRRALVMQLFQEQGFFPSAQATAAFQTRYSDIFPTKV
CLQLKIREVRQKIMQTAAPSDVSGLGIPDSIGNLPGPSNSQSGEGYMRGGGDLQDEDIEG
TEGSPEDPRDSKDSSR
NT seq
8151 nt
NT seq
+upstream
nt +downstream
nt
atgagaccatcaaagaaacacagagggcgttcttccccaataactagaggcagagggggg
cgaaggagagggggctcacagcccctccaggagaaagaccccaaaagagtcaagagggag
acacttttcaaaaccacgcagcctacacccaaccctcttacacacaaacagaccctgccc
acagtcaccaactctaacaaagaaccaatcacaaacagcaatacccccacggtggaggaa
tctactgagctgaggaaacctgtggagtcagttgagatggaaggtaagaaggcagaagaa
aagacagaaaaggacaagatagtgggcacaaatgggaatagtgctgtagccactgaatct
gtagcatttcctacctccgctccagcgccactctccacagccacgccccctctggccacc
aatcacagccccaatgtaggctcagtctctagtaggaaaacggccacctttaaggctcgt
gtgcccaagaaaaaatacacatatgagcactttgctaacaacgcaaatgccctgactacc
attcctacctccagacctgcacacatgcacaacagttactgcaatattaacaataatttc
aagagtagtaacaatattagtaatagcattaatgttagcatcaacatcagtcctaacagt
aacactacaaaagatattaacaccatgactaacagtagtgctgggagccatgatacttta
atcaatagcagtaatagtagaagtaataattgctcaggtaatcagtcatcagtcttaact
gtggatagtagagatacagaagcaaactgttttgtttccacggagaataaagccctcagg
gcagcagattccccgcaaaaagattcccaagctggggaaaacgagtcagagggggcgcct
tactcagtgcgctcttcatccactgatacagctagtgagcactcagctgacctagacgtg
atggaagcaaccggacaaagccttcatcaaaagaactccgactacccagctactcaccct
aacttgcaccataaagaggccagtctttcagagggactagccgaagttttggctaaaggc
atgaaaaaccagagagttctagctcgccagataaagaggacaatggagagtggggtcagg
gctacaggggacagaggggttaaggagattaactcatgccctttattatctgtgttcaga
ccaggggtggtgcgtagggtgagtggaggttctgttgaagtccagctccaaggagaggag
actcttattaaataccctttccatggtggaaccgtgatgacattgtcttcaggggctgag
agcactgtggagtttattttggatgcccccccacctggcatggcaccggtagcagtcagg
actcgagtgtgcgtgccctttggtggagaggaggggggtcctctgctgtacagagagggg
attatcactcaggtggacccccaccccggtgtgtcatttccttaccaggtgcttctaaat
gaagacagagagactctggacaatggaggggtgggggaagagaaagagaaaaggaaagct
aatgctcggactgtgtgggtgtcccgacaaagtctgaggcttctcacccctccttgggaa
gtcccacatttggatggtgggagggcaaaggaaagagagcgggagcgagaaagggaagag
agggagcggagggaggagatggaggtagagagggaagtgtgccagctgagtattgggatg
ggggtgctgggagggggagcgaggttaggccatagtttttcacatgaaaaggttgtaggt
gggcatccctatgtaaatgcacatccaccaccccattcctccaccgtgacatctagtgca
ggtggcagcacagttcatggctgcggagataactactctgacagagagagacagaaacag
cccaacactccagaagaggacgttgaggtatcttgttttaacatgaccctcactgtggat
ccccagccaaatgctgggacctctcaacaaataaacattgtctccaggtccagttgctac
accccctcctccccccacctcgctttggtgcgtggcctgggacccccacatttctccacc
ctacctagtcctcagccaccccgttcccctgctttactggtgtctgaaatgaacaacacc
actccaaacctacctccatcaaagaccactcccactcagacccctactcccacttctggt
ggggggtccacctctacctcctctcgctctaggactcccctctcattggctcagcagaaa
tacaagaagggcgatgtggtgtgcacccctaacggtatccgtaagaagttcaatggtaag
caatggcgtaggctgtgctccagggagggctgtatgaaggagtctcagcgtcgaggatac
tgctcaagacacttgtccatgaggaccaaagagatggagacagcggggggaggaggagga
ggaggcagcagctcagggacagtcacccctgacctgcgggggagagcaagcagtgagttt
gagtgggacgacacatcaagagagagcagtgagacaggtagcagaggagactccagaccc
cgcttggtcctcccctccctcctcccccatgacttgtcgtcacgctttgatttcgatgag
tgtgaggccgccaccatgcttgtgtcgttagggagctcccgctcaggcaccccctccttt
tctcccatctctaaccagtcgcccttctcccctgccccctctccctcaccctccccactc
tttggctttaggccggcaaacttctccccaatcaccgcatccccagtcctccaacaccgg
aggcacaggcagcccagcgggacaggcggcagtaaggtaacaaccccagctggaggagga
gaaagggagagacacacttcgggtatccagccccccttccacagcaacctaatgtttaca
gtccccatgagccccagcaaacgaaagcctgacgcacctcctccaccacccctcccctca
caccaccacgattacacacccaagacagaggtggagcagggggaccttaacaactctttc
agggtgctttccccacaaacatcagtttcacattcccgcacacacacaccaactttctcc
cgacccagaggagtgaccaccccctcctccagaagttcaccttcctccactgctgtctcc
cctcctcctctgttagtgtctccaactcctccttgtcctctaactcccgatggagggcct
cgtcgtgtggtccctgtatcccaacaggcctcgcgggactcgcctgtcattgtgagaaat
cccgaagtcccactggctaaatttacagagtgtcccttaggaacaggaggaggtggaaat
gagggagggacagatacgtcatctaaagacatcggcctaacacccctcacccctcaccca
atttctggccttcaggttcccgtccccattaacgctgctgcagccacagtacaaaatggc
actgttgtcttgcggagcccagcccaaactctggtgcttgtgtctccaacaccctcctcc
ctgcccacctctgacacccctgccacccccctgcaggccctgtcagttaccgtcagcaca
acagtcacagctcccactccaagtagcactgacagctctgtggaacaagaggagaacaga
gggacagggtttgggggtgaggtccagcagccagttccctgtcacccttctcccaccgct
ctgctgcccctgatcctcccagctgaaagccttcaccctgtcccacgaaaggacatcatc
atgggacgccctggcacagtgtggaccaatgtagagccccggtcagttccagtcttcccc
tggcattcattggtccctttcctggcacccacccaatcagatgcttcttctcagccagga
gagggtccgcacccagtcaaccatccccatgcagccagtctgaagacagagtgtcagggg
gttgcagcgcactcacaagagcctgcagaggcacctcccattgtagagagaggtcctccg
tcccgccctcccccctcttctgatgagccgcctccagagaaggagaaaggagatgcggag
atggagaggcctgacagcgagacagagagtgatgtggatgaccctttcctcccaggagtt
gctccagagcagcccctctctacatcaccagtgaagagacgcactcagtccctcagtgcg
ctgcccaaagatggagataagagcagccctggaaagagggagaaggaccacatccggcga
ccaatgaatgcatttatgatttttagtaagcgccatcgggcattggtgcaccagcggcac
ccaaaccaggacaacaggacagtcagcaagattcttggagagtggtggtatgctctggga
cctaaggagaaacaaaagtaccatgatttggccttccaggtaaaagaggcccactttaag
gcccacccagattggaaatggtgcaacaaagacaggaagaagtccagctctgagggccgt
ggggtcttagggggcaaagacatcagagagaggagcatgtctgagtccacagagccgcat
tctgtggagttgaagggggttggtccaggaatggtgggtgtgtctgaaaggagcacagga
aaaggtcatgtgggccagcttacccgtcccagagccttctctcaaagtgccatgcacagc
ctggagcggagtgatagaggcaacccacaggccctggcagaactggcccagatgtgtggg
gaaagtggcactcagttttcgagccatgccccacccctgtcacagtcccagaggggggtc
agcgaggacatgaccagtgacgaggagcgcatggtcatctgtgaggaggagggagatgac
gatgtcattgaggacccttatcctagtagttccatagatctcaaatgtaaggagcgagtg
actgacagcgatagtgagaacggttctggagacgaaagtgatcggaagagagtttttgct
ccagtcatttgctcctctgcattatcatcttcctcacaccatacccctcatggtaggagt
gtctcattgtcctcttaccccagcagcaagcgttgtgatgaggggaggtcaggaggggga
gcgttttcagatcacaggaggaaggatagaggagagggtaaggacacatttgggggagag
gggggaggaggagtgcaagcaacatctatctccctcacttctggccattcagtcatctcc
acttctccagctggagggcatccttcctcatcagtaggttcacttggggggaacccactt
cagggcattggcgctgtaagggttgcatctacggtggtgaccaatgtaatgcgtcctgtt
atcagcacaccgctccccatcgccagcaaacccagagatggaggcacattatctagcccg
catccgccagagaggaagtccttgactccccatcagcagccacaatttctgattggctca
ggatcaggaagtggggtccaagccccaagtggtgggtactactcttcatcatcacctaaa
cctttaggtgcaggcgtgggacctggtggtgtagtgactaatttggtgttaggaggaact
ctgtctgctcaacctactgtacagctcatcaccccttcccaccaacctcagccctgccag
cagcaggtgttttcctcctccactgtttcagtaccgcatagccaaaccaacgggcctgtg
cctctctccctgcttcatccccagttccttcctgcctcttccctagcatcccctgggggc
aaggccatcacacaagttcagtacatcctacccaccctacctgctaaccccaagagtcca
cctcagcaactcggccagccagccagtatcttcaacttgcccacagctccacccacacac
atgcccctggcaaatggaaagcatcaggggacaagttcactgacaggatatacgtccagc
tcaccagtgggagtggttaacccgggaactagagtgcaaacacagtctccagtgctccag
ggcaaaatgcttgtacccatggcaaccgtacggacagcaccagcccctgcccagcagttt
cccattgtggctccacctcttccggtccagaacggtgctcagacaggaagcaagatcatc
cagatagcgcccatgcctgtggtccagtcccagctgcctcaaggtggagcattccaccct
gccagccccttccctgtaacagttggcacagctgctgtggtggctcaaggatcagccccc
tcccaggctgtactcctaccaccagctccaaccaggatcagctatgtccactccactcca
ggggtcccatccactctgcctctagtctccacgacaacaggtgcttccaccacccagcaa
gccctgccggtgactggatctgcatatgttccatcgcccctggcaacactcgggttcaca
gccatcgcaccacctggacagacgctggttcagccactgattgcgggtcagccaccgctc
ctagccccagctcagtctccacagccttccatctcagccccttcctcagcctccgggggc
cagatagtcaccgccgtctaccctccttcacctagcgtcaccatggcaacaggtgtggtc
tccatgacagcagtaccccccagcgtggtctactccgtctccagcccttccagtgcttcc
ccccacatcctgtccaaatacacagcaaccccctctacagtcacgcatccacatccacat
ttccatctggacagacaggcagaccggcacctgcctccggacagacctgcagatcgacag
gcggacagacaggctgagaggcagacagaactgctgacacattcggacagacatctggag
aggcaggcctccactaatagcagctcagtggctcctcccagtggctcagctgtgtccata
aggccctgcagtcctccacttcagatccaaacacctggcaatacaccaggtacacccaaa
ctaacccagcttccagtcaggacccctcagaaggtgaaggcaacagtggcaaacatccct
gtaggcagctatgaaggaggaggccgaggaaaagagagagaaagggagaaagaaagagaa
aaggagagggagagagaaagggagagagaagcttcagccactagccacttctcctttgaa
cctgaggtggcggggcagacagggtctccatcaacacatcctgctgaggagccgccatcc
tctgaaaggaccctggagggctcctgtgttccagactcctctgacacacgacatcaagaa
agcacaagtaccaaagagactggatgtagagattccctcccctcctcacctcccccccct
ccagcagccacggaacccagcctgccgcccccacagactgacaaagacggtcctacaccc
aaaaaagtcaaagcccgcccaccgccactcaagaagacttttgactcagtggacaagtct
ggcagggtgctgtcagaagtgtactttgaggagcgctttgccgagctgccagagtttcgg
cctgaagaggttttgccttcacccaccctgcagagtctggccacttccccccgcgccatt
ctgggcagctaccgtcgcaagaggaagaactccacagatttggactcagccactgacgag
caagtctctcctaagagaaagagtcggcggcgctcaagttgcagctcagagcccaacaca
cctaaaagtgccgccaaatgcgagggggacatcttcacctttgacagagcagccacagac
ggagaagacatcctgacagatctggagtttgataaggtgccgtactcctctctgcggcga
acactggaccagaggcgagcgctggtcatgcagctgttccaggagcagggcttctttcca
tcagctcaggccactgcagccttccagacaagatactctgatatatttcccactaaggtg
tgtctgcagctgaagatcagggaggtccggcagaagatcatgcagacagctgccccctct
gatgtttctggtttaggcatccctgactcaattggcaacctccctggaccttctaactcc
cagtcaggagaaggatatatgagaggaggtggggacctgcaggatgaagacatagaaggg
acagaggggagcccagaggatcctcgggattcaaaggactcttctagatga
DBGET
integrated database retrieval system
