KEGG   Etheostoma cragini (Arkansas darter): 117946174
Entry
117946174         CDS       T07493                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
ecra  Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:ecra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ecra03400]
    117946174 (mdc1)
DNA repair and recombination proteins [BR:ecra03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    117946174 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 117946174
NCBI-ProteinID: XP_034729976
LinkDB
Position
6:19327143..19337980
AA seq 2063 aa
MDATQMICDSILESDEEENEEENKMKKGRPLAKLCILKNEHIPETELPLFLGDNVLGRDP
NNCTLPLPAPSISKQHATICVSVYRRRGYHSKVDVEALVWDLGSMNGTHKGRLKLTPNVR
YALSEGERLVVADIPCLYVSCAVDTVPSQGDMRTPVSSNSGVKAPLPDVSGEKGGDTITG
SKKCVIGGTTTRVSSPDQKDTRETPVRTNCLSFEQTPTQSQGTLVPESGSDSDGERGDRR
RKALVSDSDSYKSIPTCSTFLSPPNKVVPESEDESPITPSSSTKNRPHRHVSFSKEETDL
DVGRQQPIKKKAPAVVDDSEEEEEREEERATLRERASGDKKSSPHRNSESGQDVPVKQES
NVIITGEDGLPVSTPSIFTDLISAFDMDSDTDMEGEEEGVASLGPVTMNTNQQADQPPDT
AQLYMDSDTDVDEDDYVSEKVPKSLPSSADHSNPPQVISVIQPEGITMDSDTDVDDDDAA
VSDAGTKVEPTSIQGTHTTDSAPSTQLKDFHLDSDTDVDEEEEKKRETNSTCSKIEETPT
KLDIKPLGPDSTPPAPHSLQPDSDTDDEVIPALAISEPSMASAVTESSTSADARAQLCIL
CDSDTDVEDGAPLVIPVAVPILSVGPGITTEALQSESKADVNPDDLRVDSDTDVEDEKVD
IGEAGEGQIPSLPRENTPGFLVPLKQNCSTPIQVSEGEVEDMETQAFLSPSTGPFRRVVT
PAIRPMPLSTVSDSQEDDEFVVAETQSFVLQTRDCQANSPEDHTMDPTQAFNLDSSCDEH
GEQSSRGGSFEVGSSNSNHLQAQAQALAMDSTQAFVQCVNLEDTQEYAAISNADRTSMEN
DSNLEATQAYGENEEPVQCSVMSAKEGQLDLDLEATQAYLLEPSIDLEDESDDDERKNTA
TAETQAFDFPTSSTLAMAGTQPMSAFEEEEEEESLKKENPISSIEVKSSPQNGTDEREEH
GEAAQPQKSHLSEALSLAETQPMSISDNEESEDEDFLLGPRIRKANPLQLGEQQTQRLPN
SELSAVDTQPMNTTEDGEMDEEDWIPGPRKRRARQLQLEEETQFLANSEISVVETQPMGT
CDSEQRDEEDSSPVPRKRTARPQQIQEEETQPLTNFESSTVETLEIKTGLQPPRGKGRQS
EAGTSGTTIRNTRGTRARLTGAEEQAECSEPPRRRTRGKNKALPTARGRRGKARPDEEEN
EEEEEVVQAKGAVGKKSMREQKANEDQEERLETERNKHAEKANLIMEQEERREAKLEMER
KEKEEKERSQATIAKRLRLEKERAEKDRIDGERKEQEEKKRADKAQKEKEEQLGRERKEK
EEKERLEHEKAEREEKERLEHEKAEREEKEILKREKAEREEKERLETEKKKRMEKIKEQG
GKESLQTAKREQEERLERERKEQEHQARLEREATEREERESLEEENKPKTPARSRRAARS
TAAPHATEPEQDSTVSANDDVPARRTRSRSNSSNSVSSERSASSVNTQGSRGRGRGAKRT
GGPPQAAIVRSTNRRSTVAAEATRVTINDVSPQGVRSRSNSTNSEISSCSVSSQGRGNGG
RQRGRGRKTEAEPRSIPPFNSQSEPNLAPKLTARGMKAEESSNEVPHEDENEKSDSQQAS
TTRGRRRANENSSEPAAADKQGPSYQDERCASEESPLPKRNVRGRGQKSETVEALVAPAT
SDGDEAKDKRRGRKRVLQANKEEDSSSSSKVSKGKEKAQTPEAAEEDANRETNDDIPVRA
KRRGRASSAQPKKNPEDSPTEGQVKEESEKMEEETIERRAKGRPSRVQKKKKEEQGESGT
SVEQDAEASEPQAPSGSGSRKRQAPVDSSPVAKTPRSSSASPAASGRLRPSSHHYKVLFT
GVVDEGGERVLARLGGSMAKGVADMNCLVTDKVRRTVKFLCAVAKGVPIVTTHWLEKSGK
AGSFLSPNAFVVKDQEQEKKFNFCLQESLRIASSQSLLQGYDIHVTKSVKPEPVHMKDII
SCSGATFLSKMPSSHKPQTVVISCEEDWLLCGPALSASLPVVTAEFILTGILQQKLDLQT
HTLSAPGNTLQPAGGRGRGRKKS
NT seq 6192 nt   +upstreamnt  +downstreamnt
atggatgctactcagatgatctgtgactcaatcttggagtcagatgaggaagaaaatgaa
gaggagaataaaatgaagaagggacgaccattggctaaactgtgtatcttaaaaaatgag
cacatccctgagacagagttaccgctcttcttgggagataatgtgctgggccgtgacccc
aacaactgcacgctgcctttgccagcaccctcgatatccaagcagcacgctaccatctgc
gtctctgtctacaggagaagaggttatcacagtaaagtagacgtagaggctttggtttgg
gacttagggagcatgaatgggacccacaagggccgcttaaagctgactcctaatgtacgc
tatgccctcagtgaaggtgaacgtttggtggtggcagacatcccatgtctgtatgtcagc
tgcgctgtagacacagtcccttctcaaggggacatgaggacccctgtaagcagtaattca
ggggttaaggccccgttgccagatgtctcgggagaaaagggaggtgacacaatcacaggc
agcaagaaatgtgtcatcggcggtacaacaactagggtgtcatcacctgatcagaaggac
acaagggagactcctgtcagaaccaattgcctgtcctttgagcaaactccaacccagtca
caggggaccctggtcccggaatctggctcagactcagacggagaaagaggagacaggagg
cgcaaggctctggtgtctgattctgactcctataaatcaattcccacatgttcaacattc
ctgagtcccccgaacaaagtcgtccctgaaagtgaggatgaaagtcccatcacaccgtcc
tcctccactaaaaataggcctcacagacatgtcagctttagcaaggaggagacagactta
gatgtggggcgacagcagccgattaaaaaaaaggcacctgcggtcgtggatgacagtgaa
gaggaggaagaaagggaagaagaaagagcaacactcagagagagagcgtctggggacaaa
aaatcctcaccacaccgaaactcagaaagtggacaggatgtgccagtgaaacaggaaagc
aatgttattattacaggagaagatggattgcctgtatccacaccatcaatcttcacagat
ttgatttctgcatttgacatggacagtgacactgatatggagggagaggaggaaggagtg
gcctctttgggacctgtgaccatgaatacaaaccaacaagctgatcagccaccagacaca
gcccagctttacatggatagtgatacagatgttgatgaagatgattatgtctcagagaaa
gttcccaaatctctgccttcctctgctgaccacagcaatcctcctcaagtaatttcagtt
attcaaccagagggcatcactatggacagtgacactgatgtggatgatgatgatgctgct
gtctcagacgctggtacaaaagtagaacccacatcaattcagggcacacacacaactgac
tctgctccttcaacgcagctgaaagatttccacctagacagtgacacagatgttgacgag
gaagaagaaaagaaacgtgaaacaaatagtacatgctctaaaatcgaggaaactcccact
aaattagatatcaagccacttgggcctgattccacccctcctgcacctcatagcctgcaa
ccagacagtgacacagatgatgaagttattcctgcccttgccatcagtgaaccctcgatg
gcgtctgccgtcacagaatcatctacctctgcagatgcaagagctcaattgtgtattttg
tgtgacagcgacacagatgtggaagacggcgctcctcttgtcatacctgttgctgtccca
atcttgtcagtgggtcctgggatcacaacagaggctcttcaatcagagtcgaaagcagat
gttaatccagacgacctcagagtggacagtgacacagatgtggaagatgagaaggtggat
atcggagaggctggagagggacagattcctagcttacccagagaaaatacacctgggttt
ctggttcctctaaagcagaactgctccactcctatacaagtgtcagaaggagaagtggaa
gacatggagactcaggctttcctgagcccctccacaggtccgtttagacgtgtggtaacc
cctgctattagacctatgccattgtctactgtctcagacagccaggaggatgatgaattt
gttgtggctgagacacagtcctttgttcttcaaaccagagactgccaggccaactctcca
gaggaccacacaatggatcccacccaagctttcaaccttgattcttcttgtgatgaacat
ggcgaacagtccagcagaggaggctcttttgaggtgggatcgtccaacagtaaccacctg
caggctcaggcccaagctctagcaatggatagcacccaagcttttgtgcaatgtgtgaat
ctggaagatacccaagaatatgctgccatctcaaatgcagacagaacctccatggagaat
gattcaaatcttgaggctacgcaggcctatggagagaatgaggaaccagtccaatgttca
gtcatgtctgctaaagaaggtcagttagatttggacctagaagcaacacaggcatatctt
ttagagccctccattgatttagaggatgaaagcgatgacgatgaaagaaaaaacactgct
actgctgagactcaggcttttgactttcctacttcatctactcttgccatggctggaacc
caaccaatgtctgcctttgaggaggaggaggaggaggagagtttaaaaaaagaaaatcct
atttcctctatagaagttaagtcctcaccacagaatggaacagatgagagggaagaacat
ggggaggcagctcaacctcagaagagccatctcagtgaagctctgtctctagctgaaact
cagccaatgagtataagtgacaatgaagaaagtgaggatgaggacttccttctgggtcca
cgaataagaaaagcaaatccactgcagcttggagagcagcagacacaaagactcccaaac
tctgagctctctgctgtagatactcagccaatgaatacaactgaagatggagaaatggat
gaagaggactggattccaggtccaagaaaaagaagagcaaggcaattgcaacttgaagag
gaaacacagttcctcgctaattctgaaatctctgttgttgaaactcagcccatgggtaca
tgtgacagtgagcaaagggatgaagaagactcaagtccagttcctagaaaaagaacagca
aggccacagcaaattcaagaagaggagacacaaccacttactaattttgagtcctccact
gttgaaaccttggaaattaaaactggcttgcagcctccgaggggaaaggggagacaatct
gaagccgggaccagtgggaccactattagaaatacacgagggacgagggcaagattaaca
ggagcggaggagcaggcagagtgttctgaacctcccaggagacggacaagagggaagaat
aaagctttgccaactgccagaggaaggagaggaaaagcaaggcctgatgaggaggagaat
gaggaagaggaggaggtggtgcaggctaaaggcgctgtaggaaaaaaatccatgagggaa
cagaaagctaatgaagaccaggaagaaaggcttgaaacggagagaaacaagcacgctgaa
aaagccaacctaataatggaacaagaagaaaggagggaagccaaattagaaatggaaaga
aaagagaaggaagaaaaagagaggtcgcaggctacaattgcaaaaaggttaagacttgag
aaggagagagcagaaaaagatagaatagacggggaaagaaaggaacaagaagaaaagaaa
agagctgataaggcacaaaaggaaaaagaagaacaattgggcagggaaagaaaagagaag
gaagaaaaagagagattagaacacgaaaaggcagaaagagaagaaaaagagagattagaa
cacgaaaaggcagaaagagaagaaaaagagatattaaaacgtgaaaaggcagagagagaa
gaaaaggagagattggagacggaaaagaaaaagagaatggaaaaaataaaggaacaagga
ggaaaagaaagtttgcagacagcaaagagggaacaagaagagagacttgagagggagagg
aaggaacaagaacaccaggcgagactggagagggaagcaacagaaagggaagaacgagaa
agtttggaggaagaaaataagcccaaaacaccggcaagaagtcgaagagcagccagatcg
actgctgccccgcatgcgaccgagccggaacaagactcaaccgtatccgccaatgacgat
gtcccagcgaggagaactagatctcgctctaactcctccaactctgtcagctcagagagg
tctgcttcaagtgtgaacacccaggggagcagggggagaggcagaggagcaaagaggacc
ggtgggccaccccaggccgccattgtcagaagcaccaatagaaggagcacggtggctgca
gaggcaacacgagtaacaattaatgatgtttccccgcagggggtccgttctaggtccaac
tccaccaactcagagatttccagctgcagtgtgagctctcagggcagaggaaatggaggc
aggcagcgtggaagagggaggaaaacagaagcagagccacgttccatccctcctttcaat
agccagagtgaaccaaatttggctcccaaactcacagccagaggcatgaaagcagaggaa
tcctctaacgaggttccccatgaggatgaaaatgagaagtcagactctcagcaggctagt
accacaagagggcgacggcgagccaatgaaaatagctctgaacctgctgctgcagataag
caaggcccttcttatcaggacgagagatgtgccagtgaagagtcacctttgcctaaaagg
aatgtcagaggcagaggccaaaagagcgagactgtggaggcactagtagctcctgcaacc
agtgatggagatgaggctaaagacaagagaagaggaagaaaaagagtgttgcaggcaaat
aaagaagaggattccagcagtagctccaaagtttccaaaggcaaggagaaagcccaaaca
ccagaggcagcagaagaagatgcaaatcgtgaaacaaatgatgacattccagtccgagct
aaaagaagaggtagagcatccagcgcccaaccaaagaagaacccagaagattcccccact
gaagggcaggtgaaagaagagagtgagaaaatggaggaggagactattgagcggagagcc
aaaggtcggccatcaagggtccagaaaaagaagaaagaggaacagggagaaagtggaaca
tctgttgaacaggacgcagaggcatcagagccccaggctccaagcggcagtggatcccgg
aagcgacaggctcccgtggactcctcacctgtggcaaagaccccacgctcctcgtctgcg
tccccagcagctagtggtcgattacgaccttccagccaccactacaaggtgctgttcacc
ggcgtggtggatgaaggaggggagagagtgttagctcggttgggaggcagcatggctaaa
ggcgtggcagacatgaactgtctggtgactgataaagtgcgcaggactgtcaagttcctg
tgtgccgtggctaaaggagttcccattgtcaccacacactggcttgaaaagagtggtaag
gctgggagcttcctgtctcctaatgctttcgttgtaaaggaccaggagcaggaaaagaag
ttcaatttctgcctgcaggaatctctgaggattgccagcagtcagtctcttttacagggg
tatgatatccatgttacaaagtctgtgaaaccagagccagttcatatgaaagacataatc
tcttgcagtggagctacttttctttctaagatgccctcttctcacaagcctcagactgta
gttatttcctgcgaggaagactggctgctgtgtggcccagctctctctgcatctctccca
gtcgtcacggctgagtttattctcacagggatccttcagcagaaacttgaccttcagacc
cacacactctctgcccctggaaacactctgcagcctgcaggaggcagggggaggggccga
aagaagagctag

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