Etheostoma cragini (Arkansas darter): 117946957
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Entry
117946957 CDS
T07493
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117946957 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117946957 (cnot3a)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117946957 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117946957 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117946957
NCBI-ProteinID:
XP_034731379
LinkDB
All DBs
Position
6:18059021..18069272
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AA seq
913 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSIPVDSIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNVEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGSPAVPSSNSLIGSFSSAVQQHQHQP
AQQQQQPQPPNQPQQQQQQQQPPQTKPSVPSNNNPSPPSNPLLPASPAPSLPTPSTPSSI
ALNSQSQLTSEPTPASGLGLGLGLGLSKIGMAGTSSANQMSGLGLGGHPSSLNTMAGLIS
GSTPAPYAQAAASGGLGLSSTTQSSISENSTSILTSGSSGVTTNGVGIGLGLLGSSPAHS
SLSGSILGLVPGQNVAPGASQVPPSSVSTTPGVVGMMGSSGGNISVVGGVGANAAPARPP
SGLKQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPP
SSPSPSFSDSTPVGGSLLNGPHSYTQASEALKVPEPLSSLKAMAERAALGSGLDGEIPNL
HLTDRGRNDIFSGSSAAPGTPAAPQQSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQES
AWTHMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEG
TKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGF
TFEYRYLEDRDLQ
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagctccataatgcagctaatgcaaaccag
aaggaaaaatatgaggctgacctcaaaaaagagattaaaaaactacagcgattgagagat
caaataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaat
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcttactcaaaagaaggcttggggctcgctcagaaagtggacccagctcagagggaa
aaagaggaaacaggacagtggctaacaaatacgatagacactctaaatatgcaggtggat
cagtttgaaagtgaggtggaatctctttcggttcaaacaagaaagaagaagggtgataag
gataagcaagatcgtattgatgagctcaagcggttgattgagaggcatcgattccacatt
cgcatgttagagaccattttacgaatgctagataatgactcgataccagtggattcaatc
cagaagatcaaggatgatgttgaatactacattgattcctcccaagacccagactttgag
gagaacgagttcttgtatgacgacttagacctggaagacatccctgcagcattagttgca
acgtctccatcaggtcagggcaatgtggaggatgagatgtatctccactccagcagcact
cccacttccacaacctcttcttcacccattcctccatccccagccacttgcactgctgag
aactcagaggacgataagaaaaggggacgatcgacagacagtgaagttagtcagtcacct
gtgaagaacggcaccccatccttgctatcttccttctcctcctccaccacctctgggtcc
tcctcgtcctcctcacttgtgtccatggcaagtgttgttggaggcagtcccgcggttccc
tcaagcaacagtcttatagggagcttcagcagtgcggtgcagcaacatcagcatcaacct
gcacaacagcagcaacaacctcagccaccaaaccaaccgcagcagcagcagcagcagcag
cagccccctcagacaaaaccctctgtcccctcaaacaacaaccccagcccgccaagcaac
cctcttctcccagcctcaccagccccttctctccccacacccagcacacccagttcaata
gctctgaactctcagtctcagcttacatctgagcccaccccggcatccggtttgggactc
gggctcgggctgggattgagcaagattggcatggcaggaaccagcagtgccaaccaaatg
tctggtctgggcctgggtggccacccctcttctttaaacacaatggcagggctcatttcg
ggctccacacctgctccttatgctcaggcggcagcttcaggaggcttgggtttgagcagt
accacccagtccagcatttcagagaacagcacttccatcctcacctctggctccagtgga
gtcacaaccaacggagtggggatcgggctcggtttgctaggttccagcccggcccacagc
tctttgagtgggagtattttgggtctggttcctgggcaaaatgtagcccctggtgcctct
caggtgcccccaagttctgtcagcactacccccggagtagttggcatgatgggaagcagt
ggagggaatatcagcgtggtcggaggagtaggggctaacgctgctcctgctagaccaccc
agtggactgaagcaaaatggaagcacaagttacagtgctgtagtggcagagagctccaca
gaatcagctctaagcacaccgagccagtcacaaagcagccaaccctcatctctcagttct
tcaaccagtcagccgatggacaatggtcccagtttaatcagctccatcactctgcctccc
agctctccgtccccctcgttctcagacagcacacctgtaggagggagtcttctcaacggg
ccccactcctacacacaggcctctgaggccctcaaggtccctgagcctctcagttctctg
aaggcgatggctgaaagagcagcgctgggatcaggcttggacggagagattcccaacctg
cacctaacagacagaggtcggaacgatatcttctctggttcatccgcagcgcccggcacg
ccagccgccccccagcagtctgtgtcggaagtcagcatccccccctcgctcggggtctgt
ccacttggccccaccccgctccccaaagaccagctctaccagcaggccatgcaggaatcc
gcatggacacacatgccacacccttcggactccgagaggatcaggcaatacctgatgagg
aatccatgtcccacattgccgttccatcatcagataccaccccaccactctgactccata
gagttttaccagagactgtccacagaaactctctttttcatcttctactacctagagggc
accaaggctcagtatctgtctgccaaggctctgaagaaacaatcttggaggtttcacacc
aagtacatgatgtggttccagagacatgaggagcccaagactatcactgatgagtttgaa
cagggcacttacatttactttgactatgagaaatggggccagaggaagaaggaggggttc
acctttgagtacaggtaccttgaagaccgagatctgcagtga
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