Etheostoma cragini (Arkansas darter): 117947311
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Entry
117947311 CDS
T07493
Symbol
prdm16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra00310
Lysine degradation
ecra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
117947311 (prdm16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117947311 (prdm16)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117947311 (prdm16)
Enzymes [BR:
ecra01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
117947311 (prdm16)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117947311 (prdm16)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
117947311 (prdm16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_11
zf-H2C2_5
SET
zf-BED
C2CH-4th_BIRD-IDD
zf-C2H2_8
C2CH-3rd_BIRD-IDD
Motif
Other DBs
NCBI-GeneID:
117947311
NCBI-ProteinID:
XP_034731987
LinkDB
All DBs
Position
7:18528720..18706125
Genome browser
AA seq
1410 aa
AA seq
DB search
MRSKARARKLAKNDSEPVDSMYDTEADLPGLVGGGADSPEDDAEDGVINMSPLPSPTPSH
PNNNHHHLLHPHIYATHHHHHLHNNSNSSSNDQDFTTPKEGSPYEAPVYIPDDIPIPSEL
ELRESSVPGAGLGVWAKTCIGAGARFGLHSTLHHEATGKESSFGWEQMMNDHDEASPDSC
IKKVVDNMGNIKFALDTGPDATSNSWLKYVRSALSFEEQNLAACHLTGDQIYYKAVRDIE
AGEELLVYMKDGIFPEGSMAPNLQDEQMYRCEDCDELFSSTLELRRHQKYSCSSSGSIFD
TLREDFKQEREDSDEPVHECKDCEKIFPNEYSLGQHMIVHTEEREYKCDQCPKAFNWKSN
LIRHQMSHDSGKRFECENCDKVQHTRHVFTDPSNLQRHIRSQHVGARAHTCPECGKTFAT
SSGLKQHKHIHSSVKPFICPDGLRFFAPPGEVCHKSYTQFSNLCRHKRMHADCRTQIKCK
DCGQLFSTTSSLNKHRRFCEGKNHYGSPAGMFNPGIPMSSSPIMAKAKSHHPHLQGLNQS
GLGFTDYFPSRPHPHTGLPFSPGPHGFPSLPHGFPGIFSPSLYPRPPLLPASSLLKQSGG
SQEVKLPRSPLDAPPLSLVSSTNSNGGNSLSQLEDREKENKLDLSSGEAKPKSKMADMSD
GSDLEDVNTTSGTDLDTTTGTASGDGSDLESDGESERERSGKRRKPSGAISSQEGHQLED
TNSALISAVSSSGNFAIDRPFLSSASSQHSFFPPPDEQALPPTNTNANASTDSIKAIASI
AEKYFGPGLIGLHQEKKMGPLPYHSMFPFQFLPNFHNSLYPFNPDRGALNPSMFFKTEPK
SPREQLHKMVSGAPGAPASTGESPFDLTTKPKETKLAPPIPTNPSNPSSTGSSSGHLALS
SGEEQPLDLSIGGRIRGGHNGVAAEPQNRKNHIFGIGKGVSIKDETPSGFSHAHSQLLLQ
SSITQHQQPQAQPHQPPPLQYAKPSAFFMDPIYSRVEKRKLLDPVGALKEKFLRPSPPLF
HPQMSAMENMTEKLESFGALKLDVPPNSLQHAHPLFNFRSPPPSLSDAILRKGKERYSCR
YCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCN
RCFGQQTNLDRHLKKHEHENIPVSQQSGMLSNLGTTISSPNSEPDNHALLDEKEDSYFSE
IRNFISNSEMNQASSSLDKRSDQAEEEHPPSHSLSNSKLRLQGLEEEEEEVEGDDEEEEE
GSLTEKSHDEAQESPSHVTTGVYEEDEEEEETDTAPLAMSYEHTRRCIEEEGSLLDLEGL
PSFPKSLEGLRKAARDKQPYDVKDIFNTSLESEALKETLYRQAKTQAYAMMLSLSENNPL
HAPSQNSLDAWLSMGGGPSETSSFHPLNHI
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgagatccaaggcgagggctagaaaactggccaaaaatgacagcgagccagtggacagc
atgtacgacacagaagctgacctcccgggtttagtgggcggtggtgccgacagcccagaa
gacgacgcagaagacggcgtcatcaacatgtcccccctgccctcaccgacaccttcccat
ccaaacaacaaccaccaccacctgctgcacccccacatctacgccacccaccaccaccac
catcttcacaacaacagcaacagcagcagcaatgaccaggacttcaccacacccaaggag
ggctcgccctacgaggcgcctgtctacattcccgatgacattcccattcccagcgaactg
gagctgcgggagtcctctgttcctggtgctggcctgggcgtttgggccaagacctgcatt
ggtgctggcgcgaggtttggtctgcacagcacgctgcatcacgaggccacaggcaaagaa
agctcctttggatgggagcagatgatgaatgaccatgatgaagcctcccctgacagctgc
atcaaaaaggtggtggacaacatgggcaacatcaagtttgcgctggacactggcccggat
gccaccagcaacagctggctcaaatacgtccgctctgccctgtcatttgaggagcagaac
ctcgccgcctgtcacctcaccggagaccagatttattataaagctgtccgggacattgaa
gcaggggaggagctcttagtgtatatgaaggacggaatttttcccgagggatccatggca
cccaacctgcaagacgagcagatgtaccgctgtgaagactgtgatgagctgttctcctca
acacttgagctgcggcggcaccagaagtactcgtgctccagttccggctccatctttgac
acactgagagaggacttcaaacaggaacgtgaggacagtgacgagcctgtccacgagtgt
aaggactgtgagaagatcttcccaaatgagtacagtctgggccaacacatgatagtccat
acagaggagagggagtacaagtgtgaccagtgccccaaagccttcaactggaagtccaac
ctcatccgtcaccagatgtcacatgacagcggcaagcgctttgagtgtgaaaactgtgat
aaggtacagcatacccggcacgtgttcacagatcccagcaaccttcagcgtcacatccgc
tcccagcacgtgggtgcacgcgctcacacatgtcctgagtgtggcaagacctttgccact
tcgtcaggcctcaaacagcataagcacatccacagcagtgtcaaaccctttatctgccct
gatgggctgcgtttttttgctcccccaggcgaggtgtgccacaagtcctacacccagttt
tccaatctctgccgccacaagcgtatgcatgctgactgccgcacccagatcaagtgtaag
gactgtgggcagttgttcagcactacctcctccctcaacaagcatcgccgcttctgtgaa
ggcaaaaaccattatggctctccggcagggatgttcaaccctggcatccccatgagctcc
agccccattatggccaaggccaagtcccaccatccccaccttcaaggtctaaaccagtca
ggtttaggcttcactgactactttccctcccgacctcaccctcacactggcttgcccttc
tccccaggaccccatggattcccatccctccctcatggtttcccaggtatcttctcccca
tcactgtatccacgaccacctttattgccggctagttcactgctaaagcagtcaggaggc
agtcaggaggtgaaactgcctcggagtcccctagatgcccctccactgtccctggttagc
tccacaaacagcaatggaggtaacagtttgagtcagctggaagaccgagaaaaagagaac
aaactagatttgtcttctggagaagccaagccaaaatctaagatggcagacatgtctgac
ggtagtgaccttgaagatgttaataccacaagtgggacagatttggacaccaccactggt
actgcttcaggtgatggttctgacctggaaagcgatggagagagtgaacgtgagcgaagt
ggtaaaagaaggaagccgtctggggccatatcaagtcaagaaggccaccagttagaagac
acgaacagtgcgttgatatcagccgtgtctagttctggaaactttgctattgatcgtccc
tttctttcttctgcatcatcccagcactccttcttccctccgcctgatgagcaagccctc
ccgcccaccaacacaaatgccaatgcatccacagattccatcaaagccattgcctctatt
gcggagaagtattttggtccaggtttgattggtctccatcaggagaagaagatgggtcca
ttgccctaccattccatgtttcccttccagtttttgcccaacttccacaactccctttat
cccttcaaccctgatcgaggtgccctcaatcctagcatgttcttcaaaacagagcccaag
tcacctcgcgagcagctgcacaagatggtttctggtgccccaggagctcctgcttccaca
ggggagtccccatttgatctcaccacaaagcccaaggagaccaaattagctcctccaatc
ccaacaaacccttcaaaccctagcagtacgggcagcagtagtggacatttagcattatct
agcggtgaagagcagccgttggacctcagcattggtggccggatccgaggtggtcataat
ggtgtggcagctgagccacaaaatagaaagaaccacatctttggcattggaaaaggggtc
tccatcaaggatgaaaccccatctgggttttcacacgcccattcccagttgttgctccaa
tcctccatcacccagcatcagcagccccaggcacagccacaccagccaccaccccttcaa
tacgccaagccctcagcattcttcatggaccccatatacagcagggtggaaaagaggaag
ctactcgaccccgtaggagcgctgaaggaaaaattcctcaggccctcaccgccactcttc
catccacagatgtcagccatggagaacatgacagagaagcttgagagctttggcgctcta
aaactggacgtgccgcccaattcgctgcaacacgctcatccactgttcaacttccgctca
ccaccaccttccctctcagacgccatcctccgcaagggcaaggagcgttactcctgcagg
tattgtgggaaaatatttccccgttcggcaaacctcaccagacacttgcggacacacaca
ggggaacaaccctacaggtgtaaatactgtgaccgctcgttcagcatctcatccaatctt
caacgccacgtccgcaatatccataacaaggagaaacccttcaagtgtcacctgtgcaac
cgctgctttggtcagcaaaccaacctcgatcgccatctcaagaagcacgagcatgagaac
attccagtgagccaacagtccgggatgctttccaacctaggaaccaccatctcctcccca
aactccgagccagacaatcatgcacttttagatgagaaggaggactcatacttctcagaa
atccgcaacttcatttccaacagtgagatgaaccaggcctccagctccttggacaagaga
tcagaccaggctgaggaggaacacccacccagccacagtttgtccaactccaagctaagg
ctccaggggctggaggaggaggaggaggaagtggagggtgatgatgaggaggaggaggaa
ggcagcctaacagagaagtctcacgacgaggcgcaggagtccccatctcatgtcacaaca
ggagtgtatgaggaagacgaggaggaggaagagacggacactgctccgttagctatgagc
tatgaacacactcgcaggtgtatagaggaggagggctctctcttggacctggagggtctg
cccagttttcccaagagcctggagggcttacgtaaagcagccagagacaagcaaccttat
gatgttaaagacatatttaacacttcactagagtcggaggcgttgaaagagacattgtac
aggcaggctaaaacccaggcttatgcaatgatgctgtctctctcagagaacaaccctttg
cacgcgccctcccagaactctctggacgcttggctgagcatgggaggtggaccgtctgag
acgagcagctttcacccactcaaccacatctag
DBGET
integrated database retrieval system
