Etheostoma cragini (Arkansas darter): 117947435
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Entry
117947435 CDS
T07493
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117947435 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117947435 (prpf6)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117947435 (prpf6)
Complex C
U5 SnRNP specific factors
117947435 (prpf6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP6_TPR
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
Suf
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_17
TPR_2
TPR_8
TPR_1
FAT
TPR_CcmH_CycH
ARM_TT21_C
ARM_TT21_5th
TPR_21
Motif
Other DBs
NCBI-GeneID:
117947435
NCBI-ProteinID:
XP_034732247
LinkDB
All DBs
Position
7:11942983..11958789
Genome browser
AA seq
964 aa
AA seq
DB search
MAHAAGKQGPKIVSKSSAGGTGAAGAGGGPPVMPLASPLMGKKKKPFLGMPAPLGYVPGL
GRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQDDDDEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLSEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGENHTTVDPL
QGLGGLNTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDL
NSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTE
MCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPGSVRIYIRAAELETDIRAKKRVLRKAL
ENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKAR
ENIPTDRHIWITAAKLEEANSNTQMVDKIIDRAITSLRANGVEINREQWIQDAEECDKAG
SVATCQAVIRAVIGIGIEEEDRKHTWMEDADSCVAHGALECARAIYAHALQVFPSKKSVW
LRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQA
NPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNIDAAQEL
CTEALKHYEDFPKLWMMRGQIEEQCENMDKAREAYNQGLKKCPHSSGLWLLLSRLEERVG
QLTRARAILEKARLKNPQGADLWLESVRLEFRAGLKNIANTLMAKALQECPNSGILWAEA
VFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFLRTVKIEPDLGDA
WALFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAEVASKI
KNTF
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggcacacgctgcaggaaaacaaggacctaaaattgtctccaaatcatctgcgggaggc
accggggcggcgggggctggtggtgggcccccggtaatgcccctcgcctctccgctcatg
gggaaaaagaagaagccgtttctggggatgcccgctccgctaggctacgtccccggtctg
ggtagaggtgcaactggtttcaccacccgatctgatattggtcctgctcgtgatgccaac
gatccagtggatgaccgacatgcacctccagggaagaggaccgttggggaccaaatgaaa
aagaaccaggacgacgatgatgaagatctgaacgacacaaactacgatgagtttaatgga
tatgcaggtagcttgttctccagtggtccctatgagaaggatgatgaagaagcagatgcc
atatatgcagcactggacaagaggatggacgaaagacgcaaagaaagaagggagctgaga
gagaaggaagaaatcgagaaataccgtatggaacgacccaaaatccagcagcagttttca
gatctaaagaggaaattgtcagaggtgtcagaggaggagtggctgagcatccctgaggtg
ggagatgccaggaataagcgccagagaaatccccgctatgagaaactcacccctgtcccc
gacagcttcttctccaaacacctgcagactggagagaaccacactactgttgaccctctg
caagggctgggaggtctgaacacaccttacccaggaagcatgacaccagggacaggagag
ctggatatgaggaaaatcggtcaggccaggaacacacttatggatatgagactcagccag
gtgtctgactctgtgagcggacagacagtggtggatcctaaaggttacctgacagatctc
aactccatgatccccacacatggaggagacatcagtgacatcaagaaggctcgtctactt
cttaaatcagtgagggagaccaatccccatcacccgcctgcctggattgcctctgccagg
ctggaggaagtgaccggaaaactgcaggtggccaggaacctgatcatgaaaggcacagag
atgtgtcctaagagtgaggatgtgtggctggaggcagccaggctccagcccggagacaca
gccaaagctgtggtagcccaagctgtccgccacctgccggggtccgtccgcatctacatc
agagctgcagagttggagacagacatcagggccaagaaacgagtcctcaggaaggccctc
gagaatgtgtccaagtcagtacgactgtggaagacagctgttgagctggaggagccagag
gatgccaggatcatgcttagcagagctgtggagtgttgccctacaagtgtggagctgtgg
ttggcactagccaggttagagacatacgagaacgcacgtcgtgtactgaacaaagctcga
gagaacatccctactgatcgccacatctggatcactgctgctaagttggaggaggccaac
agcaacactcagatggtggacaagatcatcgacagagccatcacttctctgcgcgccaac
ggcgtggagatcaacagagagcagtggatacaggatgcagaggagtgtgacaaggcaggc
agtgtagctacatgccaggccgtgataagggctgtcatagggattggtattgaggaggag
gaccgcaaacacacctggatggaggatgcagatagttgtgtggcccatggggctctggag
tgtgccagggccatctatgcccatgctctgcaggtcttccccagtaaaaaaagtgtctgg
cttagagctgcttactttgagaagaataacggcaccagggagtctttggaggccctgctc
caacgggccgtggctcactgtcccaaagcagaggtcctgtggctgatgggggccaagtcc
aagtggctggctgaggatgtgcctgcagccagaagtattcttgctctggccttccaggct
aacccgaacagtgaggagatctggctggctgctgtcaagttggagtctgagaataacgag
tatgaaagagcccgtcgactgctggctaaggcccgcagcagtgccccaaccgccagggta
tttatgaagtcagtcaagttggagtgggtgttggggaacatagatgctgcccaggagttg
tgcaccgaggccctgaaacactacgaggacttccccaaactttggatgatgagaggccag
atagaagagcagtgtgaaaacatggataaggccagagaggcgtacaaccaagggttgaaa
aagtgtccccactcgagtggcctgtggttgctgctgtctcgtcttgaagagagagtggga
cagctgaccagagccagagcaatcctggagaaggcccgactcaagaatccccagggtgcc
gacctatggttggaatcggtccgactggagttccgggctggactaaagaacatcgccaac
acactgatggccaaagccctgcaggaatgccccaattcaggtatcctgtgggctgaggca
gtgtttttggaggcaaggccccagaggaagactaagagtgtggatgctttgaagaagtgt
gaacatgatccccatgtcttgcttgctgtggccaagttgttctggagtgagcgaaagatc
accaaagccagagagtggtttctgaggacagtaaagattgagccagacctgggagatgca
tgggctctcttctacaagtttgagttgcagcatggcacagaggaacagcaagaagaagtg
cgaaagcgctgtgagaatgcggagccccgccacggagagctatggtgtgccgagtccaaa
cacgtcctgaactggcagaagaagacaggagagatcttagcagaggtagccagcaagatc
aagaacacgttctga
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