Etheostoma cragini (Arkansas darter): 117947449
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Entry
117947449 CDS
T07493
Symbol
zgc:158828
Name
(RefSeq) probable ATP-dependent RNA helicase DHX35
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecra03041
]
117947449 (zgc:158828)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117947449 (zgc:158828)
Spliceosome [BR:
ecra03041
]
Complex C
Other components
Complex C specific factors
117947449 (zgc:158828)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
ABC_tran
AAA_19
Cas3-like_C_2
nSTAND3
AAA_7
AAA_30
AAA_23
Motif
Other DBs
NCBI-GeneID:
117947449
NCBI-ProteinID:
XP_034732279
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All DBs
Position
7:complement(12436155..12445308)
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AA seq
716 aa
AA seq
DB search
MTSSTRKEKKICDVETKMAAPLSTMKFWKPGSEAPGISEERELNTETTGSPIIFNPHTAL
SIEKQRQKLPVFKHRNNILYLVESFQTVIIVGETGCGKTTQIPQYLLEAGWATEGKVIGV
TQPRRVAAISVANRVAEERGALVGHEVGYTIRFDDCSDPHATRIKFLTDGMLVREMMADP
LLKKYSVLMLDEAHERTMYTDIAIGLLKKIQKKRQDLRLIVASATLDAKKFHDFFNLNES
GDPNKDTCGILTVEGRTFPVDVFYTVSPVPDYVKATVETVLKIHETEDDGDVLAFLTGQE
EVEKVVSLLQDQARSLSRYGMKKHLRILPMYSGLPYAEQMKVFERAPNSVRKVVVATNIA
ETSITINGVVFVIDCAFVKLRAYNPRTAIESLVVTPISKASASQRAGRAGRNRPGKCFRL
YTEEDFEKLPASTVPEMQRTNLAPVILQLKALGIDNVLRFSFLSPPPAQTMVQALELLYA
LGGLDHYGRLTDPMGVRMAEFPLSPMFAKMLLESGNFGCSKEIVTIAAMMQIQNIFVVPS
NQKKAAAREHRKFAVAEGDHLTMLNVYEAFIKHQKSSQWCQEHFLNYKGLLRAVTVREQL
RRLMNKFKVPRTSSEGDPDVILKCIVYGFFANAARIHHSGSYRTLRDDRELHIHPNSVLF
GEKPPKWVVFNEVVQTAKYYMRDVTAVESSWLVELAPHFYKQAKHGSLASKRSRVL
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgtctacgcggaaagaaaaaaaaatatgtgacgtagaaaccaagatggcggct
cccctttccacgatgaaattttggaagccggggtccgaggctccgggaatctcagaggag
cgggagctcaacacagagacaaccggctcccccatcatcttcaacccgcacacagccctg
tccatagagaaacagcgacagaaactccctgttttcaagcacagaaacaacatcttatac
ttggtggagagcttccagactgtcatcatagttggtgagacgggatgtgggaaaacaaca
caaatacctcagtacctgctggaggctggctgggcgacggaggggaaggtgattggagtg
acacagcctcggcgtgtggctgccatctctgtagctaaccgtgtagcagaggagcggggg
gccctggtgggacatgaggtgggctacaccatccgatttgatgactgctctgatccccac
gccacaaggatcaagttccttacagatggcatgttggtgcgggagatgatggccgatcct
cttttgaaaaaatacagtgtgttgatgctggacgaagcacatgagagaaccatgtataca
gacatagccatcggtctactaaagaagattcagaaaaagcggcaagacctgaggctgatt
gtggcctctgccactctggatgccaagaaattccacgacttcttcaacctgaacgagtcc
ggggatcctaacaaggacacgtgtggaattctgacagtggagggacgtacctttccagtg
gatgtcttctacactgtcagtcctgtcccagactatgtgaaggccacagtggagacagtg
ctgaagatccatgagacggaggatgatggagacgtcctggcttttcttactgggcaggaa
gaggtggagaaagtggtgtcccttctgcaggaccaggccaggtctctgtcacgatacggc
atgaagaaacacctgagaattttgcccatgtactctggtctaccttacgctgagcagatg
aaggtctttgagagggcgcccaactctgttcgcaaggttgtggtggccacaaacatagct
gagacctccatcactataaatggagttgtgtttgtcattgactgtgcatttgtgaagctg
cgagcctataaccctcgcactgccatcgaatcgctggtggttactcccatctccaaggct
tcagccagccagagggctgggagagccggacgaaaccgacctgggaaatgcttcagacta
tacacagaggaggactttgagaaactgcctgcctctactgtgccagagatgcaacgcacc
aatttggcccctgtcatcctgcagctcaaagcattaggcattgacaacgtgctgcggttc
agcttcctttctcctcctccagctcagaccatggttcaggctctagagctgctctacgct
ctgggaggtctggaccattacggacgtttgactgatcccatgggtgtgcggatggcagaa
tttcctctcagtcccatgtttgccaagatgctcctcgagtcaggaaactttggctgctcc
aaagagattgttaccattgcagcaatgatgcagattcagaatatatttgttgtgccgtcc
aatcagaagaaagctgctgcccgagagcacaggaagtttgcagttgctgagggagaccac
ctcaccatgctgaatgtgtacgaagcattcattaagcaccagaaaagctcccagtggtgt
caggaacacttcctcaattacaagggtctgctgcgggctgtgactgtacgagagcagctc
cggcgtctcatgaacaagtttaaggtgccacggacttcaagtgaaggtgaccctgatgtg
atcttgaagtgcattgtatatgggttttttgctaatgcagcccgcatccaccattctggt
tcctaccggactttacgagacgaccgcgagcttcacatccaccctaactctgtgctgttt
ggagagaaacctccaaaatgggttgttttcaatgaagtagtgcagacggcaaaatactac
atgcgcgatgtgacagctgtggaatcgtcctggttggtcgagttggcccctcacttttac
aagcaggccaagcatggttcactggctagcaagaggtcccgggtcctctga
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