Etheostoma cragini (Arkansas darter): 117947457
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Entry
117947457 CDS
T07493
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03250
Viral life cycle - HIV-1
ecra04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117947457 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
117947457 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117947457 (samhd1)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
117947457 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
HD
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
117947457
NCBI-ProteinID:
XP_034732297
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All DBs
Position
7:complement(12596113..12607745)
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AA seq
626 aa
AA seq
DB search
MENRKRPLGAVVTPNDSFKTPEKRVSVVRLPDPDYMRWGVEETCRYLREEGLGEWEDTFK
AQKITGVGLRDLKDADLEKIGIKCLGDRLQILHSLRKMWQIAAEANKVFNDPIHGHVELH
PLLIKIIDTPQFQRLRNLKQLGGTYFVFPGASHNRFEHCIGVGHLAGQLVQALNNRQPDL
VISRRDILCVQIAGLCHDLGHGPFSHMFDGKFIPKARPGISWKHENASLDMFDYLVKDNG
LKPVMEQHGLVLPEDLDFIKEQIAGPPDTNAAQGQKWPYKGRSEDKSFLYEIVANKRNGI
DVDKWDYFARDCYHLGIQNNFDYHRFLKFARVCEVDGQKHICTRDKEVGNLYDMFHTRNC
LHRRAYQHKVGNIIETMIAEAFLKADKHIQIEGSGGKMFTLSTAIDDMEAYTKLTDHIFE
QILHSSSPELAESRQILRNIICRRLYKCLGQTQADKPMSFTQEMIRSWEADLARSIPQSG
AQDVRLQPEDFVVNIIFMDYGMKEKNPINNVRFYCKDDLTTAIQIRKNQVSKLLPEQFAE
QLIRVYCKKTDDRSLEAAKKHFVQWCMNMNFSKPQDGDIIAPELTPLKASWSNSNEGEDG
EGGGFRKGNCASVNGQKRAKVHLDFN
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagaaaacgaccgttaggtgcggttgtgacccctaatgacagcttcaaaacg
cctgaaaagagagtgtctgtggtccggctgcccgacccggactacatgcgatggggagta
gaggaaacatgtcgatacctgcgagaagaaggtctcggagaatgggaagacacatttaaa
gcacaaaaaattacaggggtcggtctgcgggatctcaaggatgctgatctggagaaaatt
ggcataaagtgccttggtgaccgtctgcagatcctacacagcctcaggaaaatgtggcag
atagcagcagaggcaaataaggtgtttaatgatcccatccacgggcatgtggagttgcac
cctcttctcatcaaaatcattgacacacctcagttccagagactacgaaacctcaagcag
cttggagggacctactttgtctttcctggagcctcccacaaccgctttgaacactgcatt
ggggtgggtcacttggcagggcaacttgtacaagctctgaacaacaggcagccagacctc
gtcatctctcgcagagacatcctttgtgtgcagatcgctgggctttgtcatgacctggga
catgggccattttcccatatgtttgacgggaaattcatccccaaagcacgtccgggaatt
tcctggaagcatgagaacgcctctctcgacatgtttgattacctggtaaaagacaatggc
ctgaagccggtgatggagcagcacggcctggtgctgcccgaggacctggactttattaaa
gaacagatcgctggaccaccggacactaatgcagctcaaggccagaagtggccatataaa
ggccgttcagaagacaagtccttcctctatgaaattgtggccaacaaaagaaatggcatt
gatgttgacaagtgggactactttgccagggactgctatcacctgggcatccagaacaac
tttgactatcaccgcttcctaaaatttgccagggtgtgtgaagtggacgggcagaagcac
atctgcactagagacaaggaggtagggaatctgtatgacatgttccatacgaggaactgt
ctccacagaagagcctaccagcacaaagtgggcaacatcatagaaactatgattgcagag
gcctttttaaaagcagacaagcacatacagattgaaggctcaggagggaagatgttcact
ctctccacagccatagatgacatggaggcctacaccaagctgacagatcatatttttgag
caaatactccactcctcctccccggagctggctgagtccaggcagattttacgcaacatc
atctgtcgacgcctctataagtgtctgggccaaacccaggcagacaaacccatgagtttc
acccaggagatgattcgcagctgggaagcagatctggctcggtccatccctcagagcggt
gcccaggatgtccgtctgcagccagaggactttgtagttaatatcatttttatggactac
gggatgaaggaaaagaaccccatcaataatgtgcgtttctattgtaaggatgacctaact
acagccatccagattcggaagaaccaggtgtctaaacttctcccagagcagtttgctgag
cagctgatcagggtctactgcaagaagactgatgacaggagtctggaggccgccaagaag
cactttgtccagtggtgcatgaacatgaacttctcaaagcctcaggatggagacataata
gcacctgagctgactcctctaaaagccagctggtcaaacagcaatgagggcgaggatggc
gaagggggcggcttcaggaaaggaaactgtgctagtgtcaatggacaaaagagagccaaa
gttcatcttgattttaattaa
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