Etheostoma cragini (Arkansas darter): 117947721
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Entry
117947721 CDS
T07493
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117947721
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117947721
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117947721
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117947721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Amnionless
Motif
Other DBs
NCBI-GeneID:
117947721
NCBI-ProteinID:
XP_034732789
LinkDB
All DBs
Position
7:complement(8853157..8878479)
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVAFQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIKECANPLIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGVRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGALG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSAGENGAPGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGSEGAQGPRGEGGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPLGPQG
PPGPAGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKAGEKGLVGRPGLRGLSGKDGETGPAGPPGPSGPAGERGEQGQPG
PPGFQGLPGPSGSPGEAGKPGDMGVSGEAGSPGAVGPRGERGFPGERGGAGAQGLQGPRG
LPGTPGTDGPKGAIGPAGAAGPQGPPGLQGMPGERGTGGIPGPKGDRGDNGQKGPEGAPG
KDGGRGLTGPIGPPGPSGPNGAKGETGPSGQTGAAGARGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGESGQKGEAGSSGPQGPSGAPGPVGPTGVTGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGPVGPAGSAGKDGPKGARGDAGPPGRQGDAGLRGAPGAQGEKGEAG
EDGPPGADGPSGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGASGSPGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGATGVKGERGNTGPSGAPGAPGSPGAPGPVG
PLGKQGDRGESGAQGPAGPSGPAGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQG
LPGPPGSPGDAGAAGPAGPSGPKGPSGPSGPAGKDGSNGQPGPIGPPGPRGRSGEGGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNSQIETLLSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSTADAIKVFCNMETG
ETCVNPSIAEVPKKNWWTSKSKDRKHVWFGETMNGGFHFNYAEDGPVANAASVQLTFLRL
LSTEASQKLTYHCKNSIAYMDQATGNLKKALKLQGSNDVEIRAEGTSRFTYNVLEDGCKK
HTDRWGKTVFEYKTQKTSRLPIVDIAPLDIGGADQEFGVEVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcattccaagttgtttta
ctatccgtggtcagatgtcaggaagaggacgaccaggaagcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtgtgt
gacagcggagcggttctgtgtgatgagataatctgcgaggagatcaaagaatgtgccaac
cctctcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gaaacgattggtgctaagggccagaaaggtgaaccaggagagattgcagatgttgtcggg
ccaaagggaccaccaggccctatgggccccccaggtgagcagggagtacgtggagaagct
ggcgcaaagggtgataagggaaatgcaggacctcgtggaagagatggtgagcctggcacc
cctgggaacccaggacccgctggcccacccggaccaccaggacttggagggaattttgct
gctcagatggctggaggttttgatgagaaggctggaggtgctcagatgggtgtgatgcag
ggaccaatgggtcctatgggacctcgtggcccccctggacctagtggagctcctggacca
cagggtttccaaggtagccctggagaggctggagagcctggcccagctggagcactggga
cctcgtggaccacctggaccttctggaaaacctggaagtgatggcgaagctggtaaacca
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcatcctggtctggatggagctaaggga
gaaactggtgccgcaggagccaagggcgagtctggttctgcaggggagaacggcgcccct
ggacccatgggcccacgtggtcttcctggtgagagggggcgttctggagctgctggatct
gcaggtgcccgtggaaatgatggtttgcctggtcccgctggtccacctgggcctgttggt
cctgctggagctccaggtttcccaggatctccaggagccaagggagaagctggtcctact
ggagcccgtggatctgaaggtgcacagggaccccgcggagagggcggtactccaggatct
cccggacctgccggagcatcgggtaaccccggtactgatggtattcccggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccggcccccgtggcccacct
ggaccacagggagctacaggacctctggggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagctggaccaaagggagagcttggcccccttggtcctcaaggt
cctcctggccctgctggtgaagaaggcaagagaggtgcaagaggagagcctggaactgct
ggaccacttggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcaa
gatggtcttgctggtgctaagggtgctcctggtgaccgtggtgttcctggtgctgctggg
cccaaaggtgctactggagaccctggacgcacaggagagtcaggtctccccggcgcgaga
ggtcttaccggccgtcccggagatgctggtcctcaaggcaaagttggaccctctggtgct
tctggtgaggatggtcgcccaggcccacccggccctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagccaatggtgaagctggaaaggcaggagagaaa
ggtcttgtgggtcgccctggtctgagaggtctgtctggaaaagatggtgagactggacct
gctggacctcctggcccttctggacctgctggagagagaggagagcaaggacagcctgga
ccccctggcttccagggtctgcctggaccgtctggttccccaggagaggctggaaaacct
ggagacatgggtgtttctggagaggctggaagtcctggtgctgtcggacccagaggtgaa
cgtggtttccctggtgagcggggtggtgctggagctcagggtcttcagggacctcgtgga
cttcctggaacacctggaaccgatggacccaagggagccattggaccagctggtgcggct
ggaccccagggaccccccggcctgcagggtatgcctggagagagaggaactggtggtatc
ccaggacccaagggagacagaggtgacaacggacagaaaggacctgagggagctcctgga
aaggatggtggtagaggtttgactggtcccattggtcctcctggaccatctggacccaac
ggcgccaagggtgagactggaccctctggccaaactggtgctgctggtgctcgtggtgct
cctggtgaccgcggggaagttggtcctcctgggcccgctggttttgctggacctcctggt
gcagatggtcagcctggtgccaaaggagagcttggtgagtctggacagaagggagaagct
ggttcttctggacctcagggaccatctggggctcctggacctgtgggacctactggtgta
actggacctaaaggagcacgtggtgctcagggagctcctggtgctactggtttccctggt
gctgctggcagagttggatctcctggccctaatggtaaccctggccctgttggccctgct
ggttcagctggaaaagacggaccaaagggtgctcgtggtgatgccggccccccaggaaga
cagggagacgctgggcttcgtggggctcctggcgcacaaggagagaagggagaggctgga
gaggatggaccccctggtgctgatgggccttcaggtccccagggtctgggcggatctcgt
ggtattgtcggtttgcctggtcagcgtggagagagaggcttcgctggtctgcctggacct
tctggagagcctggtaaacaaggagcttctggttctcctggcgaccgcggacctcctgga
cctgtgggaccccctggacttactggacctgctggagagactggaagagagggtacccct
ggatcagatggtcctcctggtagagatggagctactggagtcaagggagagcgaggtaac
actggtccctctggcgcccctggagctcctggttcccctggtgcacctggacctgttgga
cccctcggcaagcagggagacagaggagagagtggtgctcaaggacctgcaggaccctca
ggccccgctggagctagaggaatggctggaccccaagggccacgtggagacaaaggcgag
tctggtgagactggagagaggggacagaagggtcaccgcggtttcactggtctgcagggt
cttcctggacctccaggttcccctggagatgctggagctgccggacctgccggaccaagc
ggacctaagggaccatctggaccatccggacctgctggcaaagacggatcaaatggacag
cctggccccattgggccccctggacctcgtggacgttctggagaaggtggtcctgctggt
cctcctggtaacgccggaccccctggtcctcctggtcctcctggccccggcatcgacatg
tctgcttttgcaggtctgggtcagactgagaagtcccctgatcccctcaggtacatgagg
gccgatgaggcctccagctccctcaggcagcacgacgtcgaggtcgattccacgcttaag
tccctcaacagccagattgagaccctgctcagccctgacggcagccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtaactactgggtt
gatcccaacattggcagcacagccgatgccatcaaggtcttctgtaacatggagacagga
gagacctgcgtcaacccaagcatcgccgaggtaccaaagaagaactggtggaccagcaag
agcaaggaccgcaaacacgtctggttcggagagaccatgaacggaggattccactttaac
tacgccgaggacggccctgttgccaacgctgccagtgtccagctgaccttcttgaggctt
ctgtccactgaggcatcccagaaactcacttaccactgcaagaacagcattgcctacatg
gatcaggccacaggaaacctgaagaaggctttgaagctgcagggctccaacgatgtggag
atccgcgcagagggcaccagtcgcttcacatacaacgtgttagaggatggctgcaagaaa
catacagaccggtggggcaagactgtctttgagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcccttggacatcggaggagcggatcaggagtttggagtggaa
gtaggcgcagtctgcttcttgtaa
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integrated database retrieval system
