Etheostoma cragini (Arkansas darter): 117948474
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Entry
117948474 CDS
T07493
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ecra01001
]
117948474
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117948474
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117948474
Protein kinases [BR:
ecra01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
117948474
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117948474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
Bromodomain
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
PML_CC
zf-C3HC4_2
PHD-1st_NSD
PRANC
Motif
Other DBs
NCBI-GeneID:
117948474
NCBI-ProteinID:
XP_034733989
LinkDB
All DBs
Position
8:complement(16626112..16637221)
Genome browser
AA seq
987 aa
AA seq
DB search
MDGHTETQERKDAAAIVVENEAESKQVQEEKSHATGKNYLDTCPVCHLNFHSREPKLLPC
LHSFCKKCLPSPSRNLAMAEPPNSQVDSATKPLNVIRCPVCRQECMEVDVMENAFVKDLA
EAPSSTVERQVQFCMTCDDSTEAAGFCVDCVEYLCATCVDAHQRVKFTKDHTIRQKAEVS
KEVHGMSAQRPMFCDIHKQEPLKLFCDTCDLLTCRDCQLVKHKDHNYQFLEDAYKNHKRH
MESMTHQLQEKKKLIEDISNSINSGLLQVDRNRTSVHNEIKKSICSLILEINKKGKMLVT
QLEAVTKDHESVLRKQHEDIGYLSRHLDHVINFTEWATARNGGTALLYCKRLILFQIGNL
LRAKCSTSFIPQSTIRFQSQSSYWASNLDLGSLVVESVPGHQLGGFQGIPHQLSHAGQGP
SGSPYSFTLGAPHNTLAQLQMQVDKLNPQASWQPQPPPPHWTWYQSVRLQQTVPGLLQGG
SPSNSMLPQPGRRFMVPPPKHVSPTSSLASTEFAPQPLRGMGSSSSYQPKLLDVFSSAPL
YTRTTPLAINGGVSSPQSGQTIEPTYPNRRNESGFPIYLQKPSYPQSLPPSLLHSNGQEQ
QNSLGYIAVSQEEKTGIVTWKPPETHPASGAVGSAVKKRRRSSPAPIIVIKDEPDDGSSY
VQANQRASLPDSTGDQPQISGQGERNTVPTTLQSTDNKPNSPLQPSSSPWVQSTTKVPSP
IRSLGEAQVDQHPALLKGCNEGLCTVCQTGGELLCCHTCAKLFHLSCHVPTLFKSPSGEW
FCSFCRDLSVPEKEHDFKSKPETKSVKKEPDSDGGFPPLDKQKCERLLLHLFCSELSSDF
QGSVSPSVYANNRLTIKGPMDLSAVRKRLEAKQSLCYQSPAEFVSDIRLVFGNRAVLSQQ
ADTEVAMAARKLKELFEEHLRVIFPDQTFPEIKLEMIPTAPPDSQLLSLDKIFQHGKRQR
TSSDSQDTPSCPSGEGVALKHTPSSFV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatggacacacggaaacacaggagaggaaggatgctgctgccattgtcgttgagaac
gaagctgagagcaagcaagtgcaagaggaaaagtcccatgcaaccggcaaaaattacctg
gacacttgccccgtttgccatctaaactttcacagtcgcgagcccaaacttctgccatgt
ttgcactctttttgcaagaaatgtttgccttcgccctcgaggaatttggccatggcggag
ccaccaaactcccaggttgacagcgcgaccaaaccactgaatgtgatccgctgtccagtg
tgcaggcaggagtgtatggaggtagatgtgatggaaaacgcatttgtgaaggacttagct
gaggctcccagcagcacagtggagagacaggtccagttctgtatgacctgtgatgacagc
actgaggctgctgggttttgtgtggactgtgttgagtacctctgcgccacgtgtgtggac
gcccaccagagagtcaaatttaccaaagaccacaccatcagacagaaggcagaagtatca
aaagaggtccatggtatgtctgctcagaggccgatgttctgtgacatccacaaacaagag
ccactgaagctgttctgtgacacctgtgacctgctaacctgtcgggactgccaactagtc
aagcataaggaccacaattaccagttccttgaagatgcttataaaaaccacaaacggcac
atggagagcatgacccatcagctgcaggagaagaagaaactgattgaagacatatcaaac
tccataaacagtggacttcttcaggttgatcggaaccgtacgtctgtgcataatgaaata
aagaaatccatctgcagtttgattctcgagattaacaaaaagggcaagatgctagtcact
cagcttgaggctgtaacaaaggatcatgagagtgtcctgcgaaaacaacacgaggacatc
ggctatctatccagacacctggatcatgtcatcaacttcaccgaatgggccacagccagg
aatgggggcacggccctcttatactgtaaacgtttgattctgtttcagattggaaacctc
ctgcgggcaaaatgtagtacctcgtttataccacagagcactatacgcttccagagtcaa
tcctcttattgggcttcaaatcttgatctgggctctttagtggtggagagtgtcccaggc
caccagcttggtggttttcagggtattcctcatcagctctcccacgctgggcagggcccc
tcaggctcaccctacagctttaccctgggagcaccccacaatactctggctcagctccag
atgcaggtggacaagctaaacccacaggccagctggcagccccaaccacctcctccacac
tggacatggtaccagagtgtccgactacagcaaaccgtcccagggctcctgcaaggaggc
tctccctccaacagtatgcttccccaaccaggccgaaggtttatggtgcctcctcccaaa
cacgtcagcccaactagcagcttagcgagcactgagtttgcgccccagcctctgcgggga
atgggaagcagctccagctaccaacccaaacttttggatgtattttcctctgcacctcta
tacacccgtacgacaccactggccatcaatggtggtgtcagttcacctcaatcaggacag
acgattgagcctacatatccaaataggaggaacgagtccggtttcccaatatatttgcag
aaaccaagctatccccagagcctgccaccttctttgctccacagcaatggacaagaacaa
cagaattcactagggtacattgctgtatcccaagaggagaaaacagggatcgtaacctgg
aaaccgccagaaacacacccagctagtggagcagtgggctcagctgtcaagaaaagacga
agatcgtcaccagcgcccatcattgtcattaaagatgagcctgatgatggcagtagctat
gtacaagccaaccaaagagcgagccttcctgacagcacaggtgaccaaccccaaatcagt
ggccaaggggagaggaacacagtcccgactactctccaaagcacagacaacaaacccaat
agccctttacaaccttcaagcagtccatgggtccagagtacgactaaagttccaagtccc
atccggtcactgggagaagcgcaggtagaccagcacccagctctgctgaaaggctgtaat
gaaggcttgtgtactgtgtgtcagactgggggagagctgctgtgctgccatacgtgtgcc
aagctttttcatctttcgtgccatgttccaactctcttcaaatctcctagtggggaatgg
ttttgctctttctgccgtgacctttcagttcctgagaaggagcatgacttcaaaagcaaa
cctgaaaccaaatcagtaaaaaaggagccagattctgatggaggatttccgcctttggac
aaacaaaagtgtgagaggctgctgctgcacttgttttgcagcgagctgagttcagacttt
caagggtccgtatccccctcggtatatgctaataacaggctgactataaaaggaccaatg
gatctttccgctgtgagaaaacgactggaagccaagcagagtctgtgctaccaaagccct
gcagagtttgtatcagacataaggctcgtctttggcaatcgtgcagtcctcagtcagcag
gcggacacagaggtcgccatggcagccaggaagcttaaagagctgtttgaagagcacctg
agggtcatcttccctgaccagacttttccagaaatcaaactggagatgatacccactgcc
cctcctgactctcaactcttatctcttgacaaaatattccagcatggaaagcgccagcgc
acatcttcagactcccaggataccccgagctgtcccagtggagagggagtagcattaaag
cacacaccgtcttcatttgtttag
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