Etheostoma cragini (Arkansas darter): 117948488
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Entry
117948488 CDS
T07493
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117948488 (chd9)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117948488 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
117948488
NCBI-ProteinID:
XP_034734009
LinkDB
All DBs
Position
1:28102312..28171628
Genome browser
AA seq
2997 aa
AA seq
DB search
MDFFNDPNLFVGGLEGLDEDGFSSAPSLVDELNLTADFEPLQVEPLDPGKHQDMIPTVTT
QQAVPAYSQQIGHYIGIKAQHPMGQTFSGPGATSGDLIADQHGQYHNAAMSQVPQSNGLF
CNSSSPMWGNQDQNGNMYHPLSQQQQQLCQQQLHNQQLHVRQQQTQQQQQHHPCHQQQEQ
QHRMQQLQQQQSHQQQLINQQQQINTQTLSLQQQQCHNFSFQQGGQSQRQQQVHHTQQQV
QHQLTVGGPRFHSRAMPSKSYLDSQNADMSGTCLQPQQQQGSYQSTSGRPEDPNLPFPMH
SSSMVHSLSSCSVSSATAYQAAQYPAYPGEPEIPSLSQQSLCMPTTTTAPLSSTVPELSV
TVCQFPSTAVMRTPVSQAEECPFRALRCSGETQGNCKSSEMFGASMNCYPSMSSQLPSEQ
PLGCRAINTNGYQSLGDTLLPSEAQDGDLEGLEPPDLLPDLLPQLEAALSQHDESHCSWV
DSRQERGHEHRKQPLVDYKEEKPRKNVNGPGSQVRVLSPQIKSSSSSSSSSSSSSSSSSS
SSEKRTPRRTHHQMDSPTQDKQEKANRIISEAIAKARQRGEKNIPRVMSPESFPSSSSQY
KHRKREHKGNGKARPKEKNCRKACIVPSSKPKQKAKIGKIVIKLGKKKKRKPESSEESDD
DPPTRHTSSKEDDSKRRSGRQVKRKKYAEELEARLSDDEVKVLVKAKKTNTGTSKQPAVQ
LFVENPSEEDAAVVDKIMSSRIVKKEVSPGVVVEGEEFFVKYKNYSYLHCEWATEQQLVK
DKRIQQKIKRFKMKQAQRALFFADMEEDPFNPDYVEVDRVLEVSYCEDKDTGEEVVYYLV
KWCSLPYEDSTWELKDDVDQSKIEEFEQLQAVKPDSRRMERPPTNLWKKREHSREYRNGN
SLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEIYRVGIKGPFLIIAPLS
TIANWEREFRTWTHLNVIVYHGSMISRQMLQQYEMYFRDAQGRVIRGAYKFQAVITTFEM
ILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTPLQNTVEELFS
LLHFLEPARFPSEITFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKKLAPKEETII
EVELTNIQKKYYRAILEKNFSFLAKGAGQANMPNLVNTMMELRKCCNHPYLIKGAEEKIL
EDFREVYSPTAIDFHLQAMVQSAGKLVLIDKLLPKMKAGGHRVLIFSQMVRCLDILEDYL
IQRRYLYERIDGRVRGNLRQAAIDRFSKPDSERFVFLLCTRAGGLGINLTAADTCIIFDS
DWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRD
NSLGGSTGGGAVQQQQLSKKEIEDLLRRGAYGAIMDEEDEGAKFCEEDIDQILQRRTKTI
TIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAKKADIDMEMANGRNSLVIDTPRV
RKQTRPFSATKDELAELSEGNSDSDDTKPKLRRNHDRLNSYGRTECFRVEKNLLVYGWGR
WKDILNHGRFKKQLTERDVESICRALLSYCLVHYRGDDKIKSFMWDLIAPTEEGRTKELQ
NHLGLSAPVPRGRKGKKMKIQSSSFDIHKAEWLRKHNPEHMLQDDGYKKHLKHHCNKVLL
RVRMLYYLKQEIIGSQAQRVLDGVDSSEIKIWVPDPDHSELPALWWDTISDKCLLLGVYK
HGYEKYNTVRADPTLCFLERVGRPDEKAIAAEQRGNDFMDGDVDDPEYKPAPALLKDDME
DDDSSPGDLVVTDNAGDAVPATEGETSYWPSPSVLTARLRRLITASQRYTKSRQILQIHQ
TQTPSPSSMILSAPLCPLPPTLNDTLNPKMVAKIERQQRWTRREEADFYRVVSTFGVVFD
PNLGRFDWTKFRAMARLHKKTDESLQKYLCAFTAMCRRVCRLPPKEGDSAVDPSLTIQPI
TEERASRTLYRVELLRQVREQVLRHQLLYERLPLCQMSSDLPVWWEAGTHDRDLLVGAAK
HGVSRTDYHILRDPELSFMAAQRNYSQTKAAQQQLHTSNLLLHPQSQASSSVLMGSPLPP
PAPRDAEPSEVVPKVELASEGEDGREKQGESWSPPRAPATPTGLEEKPLSEMRDKERQMV
AARTKPLTPNSSERKPKKSSKRSRREARRGSESDSDGSSSTSSSRSSSSSSSSSSSSSHS
GSSSSSSSSSCSSGSSSSSSSSSSSSEDSESEGGEGKKKGLSLCPVTFSVPAATTVKGFD
EDSVASLSTTQDETQDNHAAENGITNNSSHPFQGGGYMLAASYWPKDRVIINRLDSICQA
VLKGKWSGTRRVYEPGGAVASFYTTKLLDNANSLCEDPSSSPQGSKVTKHVAENKEFSVK
LNDQEGGLKLTFQKQGLPLKRPLESEEGPQAQQQYLARLHELQSASDTGLADITKPQCSF
QTVPPGLSGQMRLNGVLDGQPVVKRRRGRRKNVEGMDLLFMNRSRVPAVPDQVPPGWGGI
GQVGMAVAPVPGFSQSSSQVPADTDSRVPVINLKDGTRLAGDDAPRRKDLEQWLMEHPGF
VADTGAFIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKV
GGAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGR
RPKNPLAKVAAAAAAAAPNPAASALGLNPLLANGLLSGMDLSSLQAFQQNLQSLQSLQLT
AGLMGLPSDASNLAASNLAAMFPMMLSGMAGLPNLIGMSNLLGKPAQEGTAGSEEKTKGT
SSVVTGELSASKAPPHTSDTKGERTEGSNSTPSSTSSSASSASAPQSASAASAASGHPLS
LNPLLLSSMLYPGMLLTPGLNLPVSATQPQSSKSDPTVPPACPPPPAVSQSSQQEITPRA
AERDGDEDDEALEDEEEDDDDSAEQKENSGPEGSGKAESSSSESGSSSSSDDSDSSD
NT seq
8994 nt
NT seq
+upstream
nt +downstream
nt
atggacttcttcaatgaccccaacctctttgttggaggcttggaagggctggacgaggat
ggcttctcctcagcaccatcactcgtggatgagcttaacctcactgctgactttgagccc
ctccaagtggagcccctagacccagggaagcaccaagacatgatcccaacggtaactacc
caacaagccgtacctgcttatagtcagcagataggtcactacattggcattaaggcacag
catcctatggggcagacattttctggtcctggggccacaagtggtgacttgattgcagac
caacatggccagtaccataatgctgccatgagccaagtacctcaatccaatgggctgttc
tgtaacagtagcagtccaatgtggggcaaccaagaccagaatggaaatatgtaccatcca
ttatctcaacagcagcaacagctttgtcagcagcaactgcacaaccagcaacttcatgtc
agacaacaacaaacacagcagcagcaacaacaccacccgtgtcatcaacaacaggagcag
cagcacagaatgcagcagctgcaacaacagcaaagtcatcagcaacagctgataaaccag
caacaacaaattaatacacagactctgtccctgcagcaacagcagtgtcacaatttctcc
tttcaacagggaggtcaatctcagcgccaacagcaagttcaccatactcaacagcaggtt
cagcaccaactaactgtaggaggaccaaggtttcattcaagggcaatgccaagtaagtct
tatttggatagtcaaaatgctgatatgagtgggacttgcctgcaaccgcagcagcagcag
ggtagctaccagtcgacaagtggacgtccggaagaccctaacctgccctttcccatgcat
tcgtcatctatggttcactccctgtcctcatgctcagtcagttcagccactgcttaccaa
gctgctcagtaccctgcctaccctggggagccagaaatacccagtctcagtcagcagtca
ttgtgtatgcccaccaccaccacagcacccctctcttctacagtgcctgagctatcagtg
acagtatgtcagtttccatccacagcagtaatgaggaccccagttagccaggcagaggaa
tgtcctttccgggcccttcgttgctctggagaaacccagggaaactgcaagtcttctgag
atgtttggcgcgtccatgaactgctaccccagcatgtccagtcagctgccatctgagcag
cctctgggctgcagggccatcaacactaatggataccaatcattgggagacactcttctg
ccatcagaggctcaggatggagacttggagggcctggagcctcctgacctcctgcctgac
ctactgccccagctggaggctgcactcagtcagcatgatgaatcccactgttcctgggtt
gattccagacaggaaaggggacatgaacacaggaaacagccacttgttgactacaaggaa
gaaaagcctcggaagaacgttaatggtcctggtagccaggtacgggtcctcagtccccaa
ataaagagcagctcatcgtcctcctcctcttcttcatcttcgtcatcctcatccagctcc
tcatcggagaagaggacgccacggaggacacatcatcaaatggattcacctacacaggac
aagcaggagaaagccaataggataatatcagaggcaattgctaaggcccggcagcgtggg
gagaagaacatccccagagttatgagtcctgagagctttcccagctcttcctcgcagtac
aagcaccgtaaacgcgagcacaaaggaaatggcaaagcacggcctaaagagaagaactgt
aggaaggcctgtattgtgccatcctccaagcccaagcagaaggccaagattgggaaaatt
gttatcaagcttgggaagaagaaaaagcgaaagccggagtcttcagaagagtcggatgat
gaccctcccactcgacacacttcttctaaagaagacgactctaagaggcgatcgggtcga
caggtgaaaagaaagaaatacgctgaagagctggaggccaggttgtcagatgacgaggtc
aaagttcttgtcaaagccaagaaaaccaatactggaacatccaagcagcctgctgttcaa
ctctttgtagagaatcccagtgaggaggatgctgctgttgttgacaaaatcatgtcttct
cgaatcgtcaagaaggaggtctctccaggagtggtggtcgaaggggaggagttttttgta
aaatacaaaaactactcctacctacactgtgagtgggccacagagcagcagctggtgaag
gacaagaggattcaacagaagatcaaacgtttcaagatgaaacaagcacagagggcactc
ttctttgcagatatggaagaggacccctttaaccctgactatgtagaggtagacagagtg
ctggaggtgtcatattgtgaagacaaagacacaggagaggaggtggtgtactacctggtg
aagtggtgctctctgccttatgaggacagcacctgggagctgaaggatgatgtagatcag
agcaagattgaagagtttgagcagctgcaggcagtcaagccagactcgcggaggatggag
cgtccgccaacaaatctgtggaagaagagggaacattcaagagaatacaggaatggcaac
agcctcagggactaccaactagagggggtcaactggctactcttcaactggtacaacaga
cgaaactgcatcctggcagacgagatgggactgggtaagaccatccagtccatcacattc
ctagaggagatctaccgtgtgggcattaaagggccattcctcatcattgcgccactctcc
accattgccaactgggagcgcgagttccgtacttggacccatcttaatgtcattgtctac
catggaagcatgatcagcaggcagatgctccaacagtatgagatgtatttcagggatgca
cagggccgtgtgatacgaggtgcctacaagttccaagccgttatcacaacgtttgagatg
atcctgggaggctgtcccgaactcaacgccatagagtggcgctgtgttatcattgatgag
gctcaccgcctcaagaacaagaactgcaagctgctagagggctttaagctcatgaacctg
gagcacaaggttctgctgacaggtactcctcttcagaacacagtggaggagctcttcagc
ctgctccacttcctggagccagcacgcttcccctcagaaatcaccttcatgcaggagttc
ggagacctcaagactgaggagcaggtgcagaagcttcaggggatcctaaagcccatgatg
ctgcgtcggttaaaggaggacgtggagaagaagttggctcctaaagaggaaaccatcatc
gaggttgagctcaccaacattcaaaagaaatattaccgtgccatcctagagaagaacttc
tctttcttggctaaaggagctggccaggcaaatatgcccaacctggtcaacaccatgatg
gagctgagaaagtgctgcaaccacccctacctcatcaaaggggcagaagagaagatccta
gaggacttcagggaggtctatagccccactgccatcgactttcacctgcaggctatggtg
cagtctgctgggaagctggtccttatcgacaaactgctgcccaagatgaaggccggaggg
catagggtgcttatcttctcgcaaatggtgcgctgcctggacatcttggaagactacctc
attcagagaaggtacttgtatgagcgaatagatggacgtgttcgtgggaacctgcggcag
gctgctatcgaccgcttcagtaagcccgactcggaacgctttgttttccttctgtgcaca
agagctggtggcctgggaatcaatctcacagcagctgacacatgcatcatctttgactcg
gactggaacccacagaacgacctgcaggcccaggctcgctgccatcggatcggtcagaac
aaggcagtgaaggtgtaccgtctgatcaccaggaactcatatgagcgagagatgtttgat
cgcgccagcctcaagctgggcctggacaaagcagtgctgcagagcatgagcggtcgagat
aacagcctgggaggaagcaccgggggaggggcagtgcagcagcagcagctgtctaagaag
gagattgaagatctgttgcgacgtggtgcatatggggccatcatggatgaggaggatgaa
ggggccaaattctgtgaggaggatatcgatcagatcctccagcgcaggacaaagaccatc
accatcgagtccgagggacgaggatccacctttgctaaggcaagttttgtggcgtctgga
aaccgcacagacatctctctggatgaccccaacttttgggacaaatgggccaaaaaagct
gacattgatatggagatggccaacggcagaaatagcttggttatagacactcctcgtgtc
agaaagcagacaaggccgttcagcgccaccaaggatgagttggcagagctttcagagggt
aacagcgacagtgacgacacaaaacctaagctcaggcgaaaccacgaccgcctcaacagc
tacggacgcacagagtgcttcagagtagagaagaacttgcttgtttatgggtggggtcgt
tggaaggatattctcaaccatgggcgatttaagaagcaactgacagagagggatgtggag
tccatctgcagggccctgctgtcttactgcctggtccattaccgaggagatgacaaaatt
aaaagcttcatgtgggacctgatcgcccctactgaggaaggacgcaccaaggagctgcag
aatcacctgggtctgtctgctcccgtccctcggggcagaaagggtaagaaaatgaagatc
cagtccagctcttttgacatccacaaagctgagtggcttaggaagcacaacccagagcac
atgcttcaagatgacggctacaagaaacacctcaaacaccactgcaacaaggtgctgctc
agggttagaatgctctactacctaaaacaagagatcataggaagccaggcccagagggtg
ctagacggcgtggactccagtgagataaagatctgggtgccagaccctgaccattcggag
ctgccagcattgtggtgggataccatttctgacaagtgtctgctgcttggtgtctataag
catggttatgagaagtacaacactgttcgtgcagatcctaccctgtgtttcctagagcgt
gtgggacgaccagatgagaaggccatcgctgctgaacagagaggcaatgattttatggat
ggggatgtggatgacccagagtacaagcctgctccagccctgctgaaggatgatatggag
gatgatgactcttctcctggagacttggttgtcactgacaacgctggagatgcagtccca
gcaacagaaggcgaaacgtcctactggccttcaccctcggttctgacagccagactaagg
cgactaatcacagcctctcaacgctacaccaagagcaggcagatcctccagatccaccag
acccagactccctctccttcgtccatgatactgtcggctccactttgcccgctgccccct
acactcaacgacacgctcaaccccaagatggttgctaagattgagcggcaacaaaggtgg
acaagaagagaagaggctgacttctaccgtgtggtctctacttttggtgttgtattcgac
ccaaaccttggccggtttgactggaccaagttcagggccatggctcggctgcacaagaag
actgacgagagcctgcagaaatacctgtgtgcttttaccgccatgtgccggagggtgtgt
cgcctgccacccaaagagggagactctgcagtggacccgtctctgaccatccaacccatc
acagaggaacgagcatctcgtactctgtacagagtagagttgcttcgtcaggtgagggaa
caagtactccgccatcagttactctatgagcgcctgccgctgtgccagatgagctctgac
ttgcctgtctggtgggaggctggtacccatgaccgtgacctgctagttggagctgccaag
catggcgtcagtcgcacagattaccacattctgagagaccctgagctcagcttcatggct
gcccaacgcaactacagccaaacaaaagcagcacagcagcagttacatacatccaacctc
cttctgcaccctcagtcccaggcctctagctcagtattgatgggttctccgctgcctcca
cccgcgccaagagatgcagagcccagtgaggttgtacctaaagtggaactagcctcagag
ggggaggatggccgggagaagcagggggagagttggagccctcctcgagcaccagctact
cccacaggtttggaggagaagccgttgtctgagatgagggataaagagaggcagatggtg
gcggcacgaaccaaacccctgacacccaactcctctgagcggaaacctaagaaatccagc
aaaaggagccgcagggaggctaggcggggttcagagtctgactcagatggctcttcctca
acctcttcatcacgctcctcttcctcttcctcatcatcctcttcttcctcgtcacattcc
gggtccagctcatcctcctcttcatcatcttgctcctctggctcttcgtcatcctcgtcg
tcctcctcatcctcttccgaggacagtgaaagtgagggaggggaggggaagaagaaaggt
ctttctctgtgtcctgtgacgttctcagtgccggcagcaacaactgtaaagggctttgat
gaggacagtgtggcgtctctgagcactacacaggatgaaacccaagacaaccatgcggcc
gagaacggcatcactaacaactcctcgcatcctttccagggaggagggtacatgctcgct
gcatcctactggccaaaggatcgtgtgatcatcaaccgcctggacagcatctgccaggca
gtgctaaagggcaagtggtcaggaacacgtcgggtctacgagcctggaggtgcagtggcc
tccttctacaccaccaagctgctggacaacgccaacagcctgtgcgaggacccctcttcc
tcaccacaggggtcaaaggtgaccaagcatgttgcagaaaacaaggagttctcagtaaaa
ctcaacgatcaggagggaggtctgaagttgaccttccagaaacaaggtctacctctgaag
aggccacttgagtcggaagagggcccccaggcccagcagcagtacctggcacggcttcat
gagctgcagagtgcctcggacacaggcctggcagacatcaccaagcctcagtgcagcttc
cagactgtgcctccaggtcttagcggtcagatgagacttaatggagtactggatggccag
ccagtggttaagaggcggagggggaggaggaagaacgtggaggggatggacctgctcttc
atgaacaggagtagagtccctgctgttcctgatcaggtgcctccaggttggggtggtatt
ggccaggtgggcatggctgtggcccctgtgccgggcttcagccagagctccagtcaggtc
ccagcggacactgacagcagggtccctgtcattaacctcaaagatggcacccggcttgct
ggggatgacgctcccaggaggaaggatctagaacagtggctaatggagcaccctggcttt
gtggcagacacaggagcctttatccctggagtaaataaaatgcaaatgcagttccacttc
caggacggccggcccaagcagaagagacatcgctgcaggaaccccaataagattgatgtg
aacagcctgacgggagaggaaagggtccagatcatcaacaggagaaatgcacgcaaggtt
ggtggagcctttgctcctcctctgaaggatctttgccggttccttcaggagaatcctgag
tacggagtcccacctgaatgggctgatgttgtcaaacagtcgggttacctcccagagagc
atgtttgacaggatcctgactggacccattgttcctgaggaggtgagccggcggggacgc
cgacctaagaatccgctggctaaggtggcggcggcagcagccgctgctgcacccaatcca
gcagcctccgccctgggtctgaaccccctgctggccaacggcctcctctctggaatggac
ctgagcagcctgcaggccttccagcaaaacctccagagcttacagtccctgcagctcact
gcaggcctgatggggctgccgtccgacgctagcaacctggctgcaagtaacttagctgcc
atgtttcccatgatgctgtctggtatggctggattgccaaacctaattggcatgagcaac
ttgctcgggaagcctgctcaggaaggcacagcaggctctgaggagaagacaaaaggaacc
agcagcgttgtgacaggagagctgtctgcctctaaagccccccctcacacctcagacacc
aaaggagaaaggacagagggctcgaactcgactccttcctccacttccagctccgcttcc
tctgcttccgccccacaaagtgcttcagctgcctctgcagcctccggtcacccactgtct
cttaaccccttgttactctccagtatgctttacccagggatgcttctcactccaggcctt
aaccttcccgtgtctgccacacagccgcagagctcaaaaagtgaccccaccgtacctcct
gcttgtcctcctccacctgctgtctcccagtcatcgcagcaggagataactccgcgagcg
gcagagagggacggagacgaggatgacgaggcattagaagacgaagaagaagacgatgac
gactctgcagaacaaaaggaaaacagtggtcctgagggttcggggaaagctgagtcatct
tcatcagagtctgggagctcttcttcatcagatgattcagactccagtgattag
DBGET
integrated database retrieval system
