Etheostoma cragini (Arkansas darter): 117948545
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Entry
117948545 CDS
T07493
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117948545 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ecra03310
]
117948545 (roraa)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
117948545 (roraa)
Nuclear receptors [BR:
ecra03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
117948545 (roraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
117948545
NCBI-ProteinID:
XP_034734097
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Position
8:11017084..11196598
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AA seq
528 aa
AA seq
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MARCFSIDPSGLSKYNMDVQGCLCTPVLGDYLLKVIWDHSVPLIIPESIQHLHLFCCIHR
STSKTKAASAAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNC
LIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQ
PGEAEPLTPSYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLD
INGIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREEL
QQMTWQAFLQEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVL
LKAGSLEVVFVRMCRAFDTQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHL
SEDEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVS
TLRALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggctcggtgtttctccattgacccaagtgggttgtctaaatacaatatggatgtgcag
ggctgcctgtgtactccagtgctgggagactatttgctgaaggtcatttgggatcatagc
gtgccattaataattcctgaaagcatccaacatctccatctgttctgctgcatccatcgc
tccacttcaaagacaaaggcagcatctgcagctcaaatcgaaataattccctgcaagatc
tgtggagacaaatcatcaggcatccattatggcgtgataacatgtgaaggctgtaagggc
ttcttcaggaggagtcagcagagcaatgcagcctactcctgcccccgtcagaagaactgc
ctgatcgaccgcaccagccgcaaccgctgccagcactgccggctgcagaagtgcctggca
gtgggcatgtcacgagatgcggtgaagtttggtcgcatgtcaaagaagcagcgagacagc
ctgtacgctgaggtccagaagcatcggctgcagcagcagcagcgtgaccaccaacaacag
cccggggaggcagagccgctcacacctagctatggcctctccgccaatggcctcacagag
ctccatgacgacctcagcggctacatggatggtcacacccctgatggcagcaaaccagac
tctgcagttagcagcttctacctggacatccagccatctcctgaccagtcaggcctggac
atcaacggcatcaagccggagcccatttgcgactttgcccccggctctggctttttccct
tactgctccttcaccaacggagaaacctcccccaccgtgtccatggctgaactagagcac
ctggcccagaatatctccaagtcacacatggagacatgtcagtacctgagggaggagctg
cagcagatgacctggcaggccttcctgcaggaggaggtcgagagctaccagagcaagccc
cgggaagtcatgtggcagctgtgtgctatcaaaataacagaggccattcagtatgttgtg
gagttcgccaagcgcatcgacggcttcatggagctgtgtcagaacgatcagatagtgctg
ctgaaagcaggctctttggaagttgtgtttgtcagaatgtgccgtgcgtttgacacgcaa
aacaacacagtctattttgatggaaagtatgccggacctgatgtgttcaagtcattaggc
tgtgacgacttgatcagctccgtcttcgagtttgggaaaaacttgtgttctatgcacctg
tctgaggatgagatcgccctgttctccgcctttgtgttgatgtctgctgaccggtcttgg
ctccaggagaaggtgaaggttgagaaactccaacagaagatccaactggctctccagcac
gtcctgcaaaagaaccacagagaggatgggatacttacaaagttgatatgcaaagtgtcg
acactgcgagcgctgtgcagtaggcatacagagaagcttacagctttcaaagcaatatac
ccagacattgtgcgtgcccacttcccccccctatacaaggagctgtttggatcagacttt
gagcagtccatgcccgttgacgggtag
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