Etheostoma cragini (Arkansas darter): 117948619
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Entry
117948619 CDS
T07493
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117948619 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecra03009
]
117948619 (utp4)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117948619 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
WDR55
WD40_Prp19
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
DUF7165
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
PROPPIN
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Ge1_WD40
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117948619
NCBI-ProteinID:
XP_034734258
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Position
8:24865333..24879609
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AA seq
683 aa
AA seq
DB search
MGEFKVHRVRFFDYMPTAIRAIAFNSRTERLALARADGALEIFNFADNYFQEKVIPGQDG
RAVEALCWVGQRLFSAGLNGEITEYDLENLRPRYTVEAYGGPIWTISSNSQGTLLAVGCE
DGTVKMFEVLEERIQFQRNLDRQKGRIISLSWHPSGTRIAAGMMDMIRIFDAETGRATHR
LLVERGVGASKSKEVVVWSILFLSDHTIVSGDSAGKVQIWDGITGTLVRTQLVTKWDVLA
LSVSKDESSLVAGTSEGTVVQFQFISSTVDQQDKEWVRTRTFKNHSHDVRALAHTDTAVV
SGGMDTQLVVRPFLDKVEKNTQESALRKMTLPHRSLVCCAKKAGLLLFQFPDHLQLWRLG
ESDGHGKPGDSLPLKRKPEKLIQLKRKGEDHICCSALSPCGGWLAYSTITSFRLYRLQNN
NISIAKVSKLPKDICSAHQLCFSPDSSKLFASFSQSSVIVVALKQPECKYLHTLKPKSAS
RQPVHLLFASEDGKWLATANTDCEIHVYNLEKLKFHCTVPVYGSCPTAIAIHPTSSNLVA
VHADQQIFEFSLVHKEYTEWSRRLQKQGLHPLWLERDTPITHVTFNPKNPAHIILHDMFM
FCIIDQSLPLPEAKTPFYNQMTLRSLPEPQRMVHSHAFKICKNFQHLMCVSLLEDQSLVV
VERPLLNIMAQLPAPVRQKKFAT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgggtgagttcaaggtgcaccgtgttcggttcttcgactacatgcccactgctatcaga
gccatagcgtttaacagccgcaccgagcgacttgctctggcccgggctgatggagctctg
gagatcttcaacttcgctgacaactacttccaagaaaaggtcatccctggacaggacggc
agggctgttgaagctctgtgttgggtgggccagcgtctgttcagtgctggtttgaatgga
gagatcacagagtacgacctggagaacctgaggccaaggtacaccgtggaggcctatgga
ggaccaatctggaccatcagtagcaacagccaaggaacactgctagcggtcggttgtgag
gacgggacagtaaagatgtttgaagtactggaggagagaattcagtttcaaagaaacctc
gacaggcaaaaaggtcgtattatatctctctcctggcatccctctggtacacggattgct
gctggaatgatggacatgatcagaatctttgatgccgagacaggccgtgccacacacaga
ctgctggtcgaaagaggtgtcggagcatccaagagcaaagaggttgtggtttggagcatc
ctcttcctgtctgaccacaccatcgttagcggtgactctgctggaaaggtccagatctgg
gatggaatcacgggaactctggtcagaactcaattggtcaccaagtgggacgttctggct
ctgtctgtttcaaaggatgagagcagtctggtagctgggacttcagagggcacagtcgtc
cagtttcagttcatctcctctactgtcgaccagcaggataaggaatgggtccgaactagg
acctttaaaaaccactcgcatgatgtaagggcgctcgcccacaccgacaccgctgtggtt
tctggaggtatggatacccagttggtagtgcgaccattcttggacaaggtggagaaaaac
acccaggaatctgcgctgcgcaaaatgactctcccacatagaagcctggtctgttgtgca
aagaaagcaggactgctgctcttccagttccctgatcatttacagctgtggagactaggg
gagagcgatggacatgggaaacctggtgacagtcttccattgaagagaaaaccagagaaa
ctgatccagctgaagaggaagggagaggatcatatctgctgcagtgctttgtctccatgt
ggcggctggctggcatactctactatcaccagtttccgtctttacagattacagaacaac
aacatcagcatcgccaaggtgtccaaactacccaaggacatttgctcggcccaccagctc
tgcttctcccctgactcctccaaactctttgcttccttcagccaatcttcagtcattgtt
gttgccctcaaacagccggagtgcaaataccttcatacccttaaacccaagtcagcctcc
agacagccagtccacctgctgtttgccagtgaggatggcaaatggcttgcaaccgcaaac
acagactgtgagatccatgtctacaaccttgaaaagctaaagtttcattgtacagttcca
gtgtacggctcatgtcccactgccatagccatccacccaacaagcagcaaccttgttgca
gtgcatgctgaccagcagatatttgagttctctctggtgcacaaggagtacacggagtgg
agtcggaggctgcagaaacaaggactgcaccctctgtggttggagagggacacacccatc
acccatgtcaccttcaatccaaaaaatccagctcacatcattctgcacgacatgttcatg
ttctgtatcattgaccaaagtctgcccctccctgaagcaaagactccgttctacaatcag
atgacactgaggagtcttcctgagccacagaggatggtacatagccacgccttcaagata
tgcaagaatttccagcatctcatgtgtgtgagtttattggaggaccagtctctggtggta
gtggagcggcccctgctgaacataatggctcagctgcctgcacctgtccggcagaagaag
tttgctacatag
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