Etheostoma cragini (Arkansas darter): 117948747
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Entry
117948747 CDS
T07493
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117948747 (ctcf)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117948747 (ctcf)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117948747 (ctcf)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117948747 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
zf-C2H2_15
zf-WIZ
zf-C2H2_ZN142
Motif
Other DBs
NCBI-GeneID:
117948747
NCBI-ProteinID:
XP_034734464
LinkDB
All DBs
Position
8:complement(28386019..28397991)
Genome browser
AA seq
868 aa
AA seq
DB search
MKTVNLSLLFQFLPRMDGGPTEGVGVVEVPGKDFPSIQAVHSQDAMVADLLQQAAEAGGV
VEGQAGVILEQGHGDGMVTATQAQQQLMEAGVGVGVDGGAGVEMMVMDSLDPTLLQMKTE
VIDAAVGGATTVGVVGGVAGGAHQATVTTVDQTQIITLQVVNMEEQAALGLGELQLVQVP
VSATTVEALQQGTFVDTTAMPKDGDPVICHTLPLPEGFQVVKVGANGEVETVEQEEGGEA
PPEEEEDEEVGTQLMEEGEDEPIHPTNEDSNWAKDPDYQPPSGTIKKTKKGKKSRLRYAE
GDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCP
RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGE
LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR
HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL
RKQHSFIETGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDMCDYCCRQERHMVMHRRT
HTGEKPYACSQCEKTFRQKQLLDMHFKRYHDPNFVPTAFVCPKCSKTFTRRNTMARHAEN
CNGEVEDAENGAPTPKKGKRGRKRKMRSRKDEDDSEEDHAELDEEEEEEEEEDDGEVEGE
GEEEASLLQEEEEAENMELDQAPAAIPVPAPDEPPVKRKRGRPPKNAPKPPTPSRSVRVA
AKAAASAAAIIQVEDESTGAVENIIVKQEDSDVSAATPLDQGMALTVEGVGLDGEGVETV
ELAVNEETAAAAANGDLTPEMILSMMDR
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacagtcaatttatcattgttgttccagttcctaccgagaatggacggtgggcca
acagagggtgtaggtgtggtggaggtccccggcaaagacttcccctcaatccaggccgtt
cacagccaggatgccatggtggcagacctccttcagcaagctgcagaggccgggggagtg
gtagagggacaagcaggagtcatcctggaacaaggtcacggggacggaatggtaacagcc
actcaggcccagcagcagctgatggaagctggggtgggggttggtgtggatggtggagca
ggggttgaaatgatggttatggactcactggatcccaccctgttgcagatgaagaccgag
gtgatcgatgctgcagtggggggagcaacaactgtgggtgttgttggaggggtagcaggt
ggtgctcaccaagcaactgtaacaacagtggaccagactcaaatcataacactacaggtg
gtaaacatggaggagcaggcagctctgggtctgggagagctgcagctggtccaggtacct
gtttctgccaccactgtggaggccctgcagcaaggcacctttgtagacaccactgctatg
ccaaaggacggagacccggtcatttgccacaccctgccgctgccggagggctttcaggta
gttaaggttggcgctaatggggaggtggagacagtagagcaggaagagggaggagaagcc
ccccctgaagaggaggaagatgaggaagtggggacccagctgatggaagaaggggaggat
gaacccattcatcctacgaatgaagactcaaactgggctaaagacccggactatcagccc
ccaagtggaactatcaagaagaccaagaagggtaaaaagagtcgcctgcgttatgctgaa
ggagataaggacatggatgtcagtgtctatgactttgaagaggaacagcaggaggggctt
ctgtctgaggtcaatgctgagaaagtggtgggcaacatgaaaccacccaaacccaccaag
atcaaaaagaaaggagtgaagaagacatttcagtgtgagctgtgtagctatacgtgcccc
cgacgctccaacctggacagacacatgaagagccacacagacgaaagacctcacaaatgt
cacctgtgtggaagagccttcaggacggtcacgctgctaagaaaccatctcaatacacac
actggaactcgtccacacaagtgcacagactgcgatatggcttttgtgactagtggagag
ttggttcgtcatcgtcgctataagcacacacatgagaaacccttcaaatgctccatgtgt
gactacgccagtgtggaggtgagcaaattaaagcgtcacatccgttcccacaccggtgaa
cgtccattccagtgcagtctttgcagctacgccagcagagacacatacaagctgaagaga
cacatgaggacacactcaggagagaaaccttacgagtgctacatctgccatgcccgattc
acccagagtggaaccatgaagatgcacattctgcagaaacacacagagaatgtggcaaaa
tttcactgtccgcactgtgacactgttattgcacgcaaaagtgacttaggtgttcatctt
cgtaagcagcactcattcattgagactggaaagaagtgtcgttactgtgacgctgttttc
cacgagcgctatgctctgatccagcatcagaaatctcataagaacgagaagaggtttaaa
tgtgacatgtgtgactactgctgtcgccaggagcgccacatggtcatgcatcgtcgaacc
cacacgggagagaaaccatatgcctgcagccagtgtgagaagaccttcagacagaagcag
ctgcttgacatgcacttcaaacgctaccacgaccccaactttgtccccaccgcctttgtc
tgccccaagtgtagcaagaccttcactcgcaggaacaccatggctcgtcatgctgagaac
tgcaatggtgaagtggaggatgctgagaacggagctccgaccccaaagaaaggaaagcga
ggaagaaagaggaagatgaggagcaggaaagatgaggatgacagcgaagaggaccacgct
gaactggatgaggaggaggaggaggaggaggaggaggatgacggtgaggttgagggtgaa
ggtgaggaagaagcatcgctcctacaggaagaggaggaggcagaaaacatggaactagac
caggcgcctgctgccatcccggtaccggctcccgacgagcccccggtcaagagaaaacga
ggccggcccccaaagaacgcccccaagcctccaacacccagcagatcagtcagggtggct
gccaaggcggctgcttctgctgctgccatcatccaggtggaggatgagagcaccggagca
gtagaaaacatcatagtgaagcaggaggatagcgacgtctctgctgcgacgcctctggat
cagggcatggccctgaccgtggagggggtagggctggacggggaaggggtggagactgtt
gagttggctgtgaacgaggaaacagcggctgccgccgccaacggggacctgacgccagag
atgatcctcagcatgatggaccggtga
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