Etheostoma cragini (Arkansas darter): 117948994
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Entry
117948994 CDS
T07493
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ecra03009
]
117948994 (ighmbp2)
03012 Translation factors [BR:
ecra03012
]
117948994 (ighmbp2)
Enzymes [BR:
ecra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117948994 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
117948994 (ighmbp2)
Ribosome biogenesis [BR:
ecra03009
]
Eukaryotic type
Other ribosome biogenesis factors
117948994 (ighmbp2)
Translation factors [BR:
ecra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117948994 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
Viral_helicase1
DEAD
nSTAND3
Helicase_RecD
AAA_22
AAA_16
UvrD-helicase
IstB_IS21
Flavi_DEAD
ABC_tran
DnaB_C
SLFN-g3_helicase
AAA_28
AAA_25
PhoH
NPHP3_N
AAA
ATPase
SRP54
Zot
AAA_31
Motif
Other DBs
NCBI-GeneID:
117948994
NCBI-ProteinID:
XP_034734865
LinkDB
All DBs
Position
8:complement(12227121..12235454)
Genome browser
AA seq
995 aa
AA seq
DB search
MMAIEQFVSKTLELLQEEREAEIEETRIWQENISLKDLQNKGVCLLKLQIGSQSTGLYGR
TVVVLEPRKYLGFSYLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQASISVAFDD
SKDGLSFDTDALHNLLKLANDVTYKRMKNALNALNGYSNGPAANLINVLFGDTKPSSQSQ
PNEVKFFNSNLDYSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCC
APSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDMD
KAIKGIKKMSENGDRVNFKREIGELRKELKTRESTAIAQILKSADVVLSTNTGASGDGPL
KFLPAGHFDWVVIDECAQALEGSCWIALLRARKCILAGDYKQLPPTIKSQRAASKGLSLS
LMERLIQMYGDSVVRMLTVQYRMHSAIMEWASKEMYQGRLTAHSSVERHLLKDLPEVACV
EETSTPLLLIDTAGCGLSEMEVTDEQSKGNKGEVDIVELHIKALTEAGVKAKDIAVIAPY
NLQVDLLRQKLSLRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAV
TRARRHIAVVCDTQTVQNHAFLKSLINHMTEFGEVRTAFEYIGDIVPQNYTRDHKDTKTS
TSASSSTSNKQKVKDRPLSRAKQQQKKVTGSNSNGNSAGTEKNTKSCITALTEEEQKKNR
CAEVRAQVESFVKASNQSELQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKDRCITVAR
PLVSTPAEEPRQEEDEEAQEEEAVLKPQMEPLCQPPLDLKRLHLERMKREQQKREENAES
KKQQKNIPPAPAQSLKKPKSAKGKSRMKAGACGIAAAAAPDDDFDTLINAVIKADSVCSF
VKCKASVLTLGQLCLFCNRQYCLGHHIPEVHGCGDKAKSHARMRISKEGILYAGSGKRDT
TMDPSKKAYLQRKLDSKLKDMSSQRKPKKDKENES
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgattgaacaatttgtgtcaaagacgcttgagcttctacaggaggagagggaa
gctgaaatagaagagaccaggatatggcaggagaacatctctctcaaggatcttcaaaat
aaaggagtatgcctgctgaaattgcagataggaagtcagtccacaggcctgtatggtcgc
acagtcgttgtcctcgagccaagaaagtatcttggtttctcatatctgccaagcaacagc
tttggacctggggacattgttggcttgtatgacactggcggatgcaccgcagcttcacag
attggcacaggaatagtgacgagggtcagccaagcttctataagtgtggcctttgacgat
tcaaaggatggccttagctttgatacagatgctcttcacaacctcttaaagttagcaaat
gacgtcacctacaaacgaatgaaaaatgccttgaatgcattaaatggatacagcaacgga
ccagctgccaatctaataaatgtcctctttggcgacacaaaaccttcttctcaatcacag
ccaaacgaagttaaattctttaactcaaacctggattattcccaaagagaagcagtgtcc
tttacgctgtctcaaagagaactggctgtgattcatggaccaccaggcactgggaaaacc
accacagtggtggagatcatcctgcaagcagtcaaacaaggccaaaaggtcctgtgctgt
gccccctctaacgtggctgtggataatttagtggagaggttagcccggtgcaaggcaaag
gtcctccggctcggtcaccctgccagacttttggagtccatacagaaacattcattagac
gccatcctcgctcagagtgataatgcaaacatcatcgcagacatccgtaaagatatggat
aaagcaattaagggaataaagaagatgagtgaaaatggagatcgggtgaactttaaaagg
gaaataggggagctaagaaaagagctaaaaaccagagaatcaacagccatcgctcagatc
ctaaaaagtgcggatgttgtgttatcaacaaacacaggtgcttctggtgacggccctctg
aagttcctgccagcagggcattttgattgggtggtgatagacgagtgtgctcaggccctg
gaaggcagctgctggatcgccctgctcagagcgcgcaagtgcattctggctggagactac
aagcagttaccacctactatcaaatcccaaagggctgcatcaaaaggcttgtctctcagt
ctcatggagagactcatccagatgtatggggactcagtggtccgtatgctaacagttcag
taccgcatgcacagtgccatcatggagtgggcctccaaagagatgtaccagggaagacta
acagctcacagctctgtagaaagacacttgttaaaagatctacctgaagtcgcctgcgtt
gaagagaccagcacgccacttcttcttatcgacactgcgggctgcggtctgagtgagatg
gaggtcacagatgagcagtccaaaggcaataaaggtgaggtggacattgttgaactgcac
ataaaggccttgactgaagctggggttaaggctaaagacatcgctgttattgctccgtac
aatctacaagtcgatcttctgcgtcagaaactttctttgaggcatccggagctggagata
aagtcagtggatggatttcagggcagagagaaagaggctgtggtgttgtcattagttcgg
tccaacagaaagggggaagttggatttctggcagaggacagaaggattaatgtggctgtt
acacgtgcaagacgtcacatcgctgttgtgtgcgacacccagactgtccagaatcatgct
ttcctgaagtccctgatcaatcacatgactgagtttggcgaggttagaacggcatttgag
tacatcggagacattgtgccacaaaactacacccgcgaccacaaagacacaaagacttct
acatctgccagcagctccacgtccaacaaacagaaggtcaaagatcggcctctaagcagg
gccaagcaacaacaaaagaaggtcactggtagcaacagtaatggaaattctgctggtaca
gagaagaacacaaagtcctgcataaccgcactgacagaggaagaacagaagaagaacagg
tgtgctgaggtcagagcgcaggtggagagctttgtaaaggcctcaaatcagagtgaacta
cagttcccatcatcgtttaactctcatgaccgcctgctggtccaccagattgctgaggag
ctgggcctcgtgcatgagagtaaaggtgaggggaaagacaggtgtatcactgttgccagg
ccactggtgtcaacaccagctgaggagccaagacaagaagaagatgaagaagctcaggaa
gaagaagcagtccttaaaccccaaatggagccactttgtcaacctccattagacctcaaa
aggttacatttggagcgaatgaagagggagcagcagaagagggaagaaaacgctgaatca
aaaaagcaacagaaaaacatcccaccagctccggcccagtcattaaagaagcccaagtca
gctaaaggaaagagccgaatgaaggcaggcgcctgtggcatcgctgctgccgccgctcca
gatgatgacttcgacacacttatcaatgctgtcattaaggccgacagtgtatgcagtttt
gtcaagtgtaaagcttctgtgctgacacttggacagctttgcctgttctgcaacaggcag
tattgtctcggtcatcatataccagaggttcacggctgtggggataaagccaagtctcat
gctcggatgagaataagcaaagaaggcattctttacgccgggagtgggaagagagacaca
accatggaccccagtaagaaagcctacctgcaaaggaagctggactctaaactgaaagat
atgtcatcacagaggaaaccaaaaaaagacaaagagaatgaaagttaa
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