Etheostoma cragini (Arkansas darter): 117949094
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Entry
117949094 CDS
T07493
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117949094 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117949094 (lrrc4ca)
Cell adhesion molecules [BR:
ecra04515
]
Immunoglobulin superfamily
NGL family
117949094 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
LRR_NXF1-5
DUF7617
Mid2
Ig_6
Sp38
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
117949094
NCBI-ProteinID:
XP_034734997
LinkDB
All DBs
Position
8:19869565..19924120
Genome browser
AA seq
647 aa
AA seq
DB search
MLNKMTSQQQQMMRGPRWNRALSDPLFVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKV
ICTRRGLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRKIELGAF
NGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDLG
ELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLTVIQPGSFK
GLIHLQKLWMMHAQIQIIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLHH
NPWNCNCDILWLSWWLKEMVPANTSCCARCSSPTQHKGRYIGELDQNYFHCYAPVIVEPP
TDLNVTEGSAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQDT
GTYTCMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIETPHNEGFTTAVQQKVGPT
PSAGTWESVSPTSTTTTTVRTALSTRATEKTYTIPVTELGGEGSLNGLDEVMKTTKIIIG
CFVAITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCVAGGPGMEGHLTLPPL
EHEHLNHYNTYKTAYNHASTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacaagatgacctctcagcagcagcagatgatgcgaggtcctaggtggaaccgg
gccttgtccgaccctttgtttgtggtgcttctggccctgcaactgctggtggtggcaggg
ctggtgcgtgcgcagacatgcccctctgtctgctcctgcagtaaccagttcagcaaagtc
atctgcacacgacgaggtttgcgggaagtccctgatggcatctctaccaacacacgctac
ctgaatctgcaagaaaatctcattcaggtcataaaggtggacagcttcaagcacctaaga
catctggagatcctgcagctgagcaaaaaccacatacgcaaaattgagctgggggcattc
aatggactggccagcctcaatacattggagctttttgacaaccgcctcactactatccca
aacggggcatttgagtacttgtccaaactaaaggagctttggctgaggaataaccccatc
gagagcattccctcctatgctttcaacagagtgccctctttaaggcgtttggatcttggg
gagctcaaacggctgtcctacatatctgagggggcctttgaagggttgagcaatctgcgc
tacttaaatctgggaatgtgcaatctgaaggaaattcccaaccttattcccttggtgaag
ctggatgaactggagatgtcggggaaccagcttaccgtcatccagcctggctcttttaaa
ggcctcatccatttgcagaagttatggatgatgcatgcccagatccagatcatagaaagg
aactcttttgatgacctgcagtcactagtggagctcaatctagcccataacaaccttacc
ctcttgccccatgatctcttcactcctttacatcacctggagagggtgcacctgcaccac
aacccatggaattgtaactgtgacatcctctggctaagctggtggcttaaggagatggtg
ccagcaaacaccagctgctgtgcccgctgcagctcaccaacccagcataagggacgatac
attggcgagttggaccagaactactttcattgttatgctcctgttattgtggagcctccc
acggaccttaatgtgacagagggaagcgctgcagagttgaaatgtagagccagttctttg
acctctgtaagctggattacacccaatggttccatcatgacacatggtgcttacaagatc
agaatctccgtgctgaatgacggcactctgaacttcaccaatgttaccatgcaagacaca
ggcacgtacacatgtatggtcagtaattcagcaggtaacacaacagcatctgccacactc
aatgtgtcctctacagagaacagtagcttcagctacttcaccacagtgacagtggagacc
atagaaacgccacataatgaaggcttcaccactgctgtgcagcagaaggtggggcccaca
ccctctgctggtacatgggagtctgtttcacccacctctacaactaccactacagtccgg
accgcgctctccacccgcgccacagagaagacttacacaatccccgtcacagagctgggt
ggggagggctcgctgaatggcttggatgaggtgatgaagaccaccaagatcatcattggc
tgctttgttgcgatcacactgatggcagcagtcatgctaatcatcttctacaagatgcgc
aaacagcaccaccagcaaaaccaccacgcacccacacgcaccattgagatcatcaatgtg
gacgaggactgtgtagcgggaggcccgggcatggagggccatctgaccctgcctcctctt
gagcacgagcacctcaaccactataacacctataagactgcttacaaccacgcctccacg
atcaactccatacacagctcagcgcacgaacctttgttaatccgcgccagctcaaaagac
aatgtacaagagacccaaatctaa
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