Etheostoma cragini (Arkansas darter): 117949106
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Entry
117949106 CDS
T07493
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117949106 (lingo1a)
Membrane trafficking [BR:
ecra04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117949106 (lingo1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_1
I-set
Ig_3
ig
Ig_2
LRR_Zer-1
LRR_9
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
117949106
NCBI-ProteinID:
XP_034735011
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Position
8:6281764..6307452
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AA seq
615 aa
AA seq
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MAAGEATGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNVQERSVMCHRKKLMTVPE
GIPAETRLLDLSKNRIRTINPDEFANFPNLEHLELSENTISTIEPGAFNNLYGLRTMGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLSLEKCNLSSVPTEAFTHLHSLITLRLRLLNINVIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIANANLTTVPYVALRHLVYLRFLNLSYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNSLSTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKPQQKFVDEGAIVHFACQADGDPAPVIMWLSPQKKFITTKTIGRLSVLPDGTLEVRYA
QIQDNGTYVCIASNAGGNDTSLAHLHIHSYSPDWPHQPNKTFAFISNQPAETGANGTRAN
APFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGMS
SNTVDAPRKFNMKMI
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcagctggggaagcgactgggcacagctacctggtggcttgctggcagcccattctg
atcctgatgctcggcactgtgctgtctggctcaacaacaggttgtccatcccgctgtgag
tgcaatgttcaagagcgttctgtgatgtgccaccgcaagaagctcatgacagttcccgag
ggaatacctgcagaaacaagactgctggacctcagcaaaaaccgcataagaaccatcaac
ccagatgagtttgccaactttcccaaccttgaacacctggagctcagtgaaaacactatc
tccactattgaacctggtgcgttcaacaacctttacggcttgcggacaatggggcttcgt
agcaacaagcttaagctgatccagctcggtgtctttacaggattgagcaatctcacacag
ctggacataagtgagaacaagatcgtcatcctgttggactacatgttccaggatttgtac
aacctccggtctttagaggtgggtgataacgacctggttttcatctcccaccgggcgttt
catggcctaagcagccttgagcacctgagtcttgagaagtgcaacttgtcttctgtgcca
acagaggcttttacccaccttcacagtttaatcactcttaggctgcgcctcctcaatatc
aatgtcatacgggattattccttcaaacggctctatcggctgaaagtgttggaaatagcc
aattggccatatctggatacgatgaccccaaattgcttgtatggattaaatctcacctcc
ctaaccattgcaaatgccaacctgaccacagttccttatgtagccctgcggcacttggtt
tatttgcgctttcttaatctttcctataaccctatccacacaattgaggggaataagcta
cacgatcttctgcgtctgcaggaatttcacctagtaggaggcagactggcaatgattgag
ccctactctttccgtggtctaaactacctgaagattcttaatgtgtctggaaactctctt
agcactttagaagagtctgctttccattcagttggcaacctggaaacccttgccttgtat
gataatcccctggcctgtgactgccgactgttatgggtttttcgacgacgctggagacta
aacttcaacaggcagcagccaacctgtgcctcgcctgagtttgtccaaggcaaagaattc
aaagatttcccggatgttctgcagcctaactacttcacatgtcgcaagtctaggattagg
gatcgcaaaccccagcagaaatttgttgacgagggagccatcgttcattttgcttgccaa
gcagatggagatccggctccagtgataatgtggttatccccgcagaaaaagtttatcact
accaaaacaattggaaggctgtccgttttgccagacggtacactcgaggttcgctatgcc
cagattcaggacaatggcacatatgtgtgtatagctagcaatgcaggcggaaatgacacg
tctcttgctcacctgcacattcatagctactcgcctgactggccacaccagcccaacaag
acttttgccttcatctccaaccagcccgcagaaactggtgctaatggtacaagagccaat
gctcctttcccctttgatataaagacgttgatcattgcgaccactatgggcttcatctct
ttcctcggtgtcgtcttgttttgcctggtactgcttttcctttggagcagaggtaaaggc
aacactaagcacaacatagagattgagtatgtgccacggaaatcggacgctggcatgagc
agcaacacagtggatgctcctcgcaagtttaacatgaaaatgatttaa
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