Etheostoma cragini (Arkansas darter): 117949227
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Entry
117949227 CDS
T07493
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04110
Cell cycle
ecra04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
117949227 (smc1b)
04114 Oocyte meiosis
117949227 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecra03036
]
117949227 (smc1b)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
117949227 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
117949227 (smc1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_29
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
117949227
NCBI-ProteinID:
XP_034735196
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Position
8:4204386..4226686
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AA seq
1236 aa
AA seq
DB search
MGYLKQIDIENFKSWRGKRVIGPFMRFNCIIGTNGSGKSNVMDALSFAMGERAASLRVKH
LKDLIHGAHIGRPVLHTARVAMRYCDDDDQETVFCRSIIGESSEFCINGVHVSFAKYMEE
LEKVGIVTKARNCLVFQGAVESIALKDPKERTKMFECISQSKEYAAEYDQKKQALLKAKE
DTQFHFNKKKSATVERKQVSQEKIEAQKYQALLDELHQNRLQLSLAELCHNEKGTNAISN
TLREKQQAAAAKNNKLVNAEQTVKTCKKEHGRFSREQQHIEKEIRAQEHILSQCRSQYIK
AKVNTSHHMKKAEEVRDVLRKSQKLIASKERELTEGRQEISELERTWKNYEKQIQEKGAS
LGRDVELDKDQLGHYKELKELARKQGAVLNQQAEKLYWQVKADYEKMAFDQRCKKEVEVA
IRNNQTQLEDLTHRAEKLEEYTTSCKLSLEEYLQREQNLSAELQRGRQRSEEVNQELGQV
LEELGNARLDSQESRRQMQRKELLERLRRLYPDTVFGRLSDLCSPIHKKYQLAVIKVFGR
YMNAIVVASEKVARDCINFIKQERAEPETFLPIDYLEASPLNERLREVPGAKMVVDVVQF
NTASGAGQLRKVVQFVCGNALVCETIKEARSVAFDRQERHKAVSLDGTLFSKSGIVSGGS
SYLRTKARCWDEKDMLQLKERKDQLTAEIRDLMKLRRRDSDLKQIIAEAQGLQTRLKYSK
TDLENLRKKAIPKYQADICRMESEFANLDSQIQMQQQSVEAKDAEMRKIRDQINQMEDLV
FSDFCAEIGVDNIREYEQEHLKQQTELDKKRLEFETQCTRLNAQLEYKQDQLAQQKKKLH
KMEEIIDKEDRAIAEQRKDEEKMLVAVEEGQSKLLELKNQMLSKKSQVAAAKAELDKKTQ
SLQEISRELVKLQREVMSAETALEQKRLARHNLLLACKIQGLPITLLSGSLDEISEVQLD
TESESTSATTSIYEREAQLVIDYSGLDAELRNLQADEEVKAYIERLKESVSSIEGVLSRT
TTPNLKALEKIREVKERLQGVTDAFEASTRAARKCSQKFEQVKARRLQLFNQCFEHVSVV
IDQIYKRICRNSSAQAILSADNPDEPYLGGINYNCVAPGKRFMSMDNLSGGEKAIAALAL
LFAIHSFRPAPFFILDEVDAALDNTNIGKVTSFIREESRENMQIIVISLKEEFFSKADAL
LGVYSDFDECMFSCILSLDLRPYPLAEEDNGKQADK
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atgggctacttaaaacaaatagatattgaaaacttcaagtcatggcgagggaagagagtc
atcggtccgttcatgcgatttaattgtattattggcacaaatggctctggcaagtccaat
gtgatggacgccctgagctttgcaatgggggagcgggctgcctctcttcgggtaaagcac
cttaaggacctgattcatggagcccacatcgggcggccggtgctccataccgcccgcgtg
gcgatgcgatactgcgacgacgacgaccaggagaccgtcttctgtaggagcatcataggt
gaatcctctgagttttgcatcaatggtgtacatgtctcttttgctaaatacatggaggag
ctggagaaggttggcattgtgaccaaagcccgaaactgtctggtgttccagggcgcagtg
gagtccatagctctgaaagacccaaaggagagaaccaagatgtttgagtgcatcagtcag
tcaaaagagtatgctgcagagtatgatcagaagaagcaggcccttctcaaggccaaagag
gacacacagtttcacttcaacaagaagaaatctgctactgttgagaggaaacaagtgtcc
caggaaaaaatagaggcgcagaagtaccaggcgctgttggacgaacttcaccagaaccgc
ctgcagctaagcctggctgagctctgccataatgagaagggcaccaacgctatcagcaat
accctgagggagaaacagcaggctgcagctgctaagaacaataaactggtgaatgcagag
caaacggtcaaaacctgcaagaaagaacatggacgtttcagcagagagcagcagcacata
gagaaggagatccgtgcccaggagcatatcctgtcccagtgtcgatcccagtacattaaa
gccaaggtaaacacctcccatcacatgaagaaggctgaggaggttcgtgatgtcctgaga
aagagtcagaagctgatagctagtaaagagcgggagctaacagaggggcggcaggagatc
tctgaactggagaggacctggaagaactatgagaagcagatacaggaaaagggggcctcc
ctggggagagatgtcgagctggataaggatcagttagggcattacaaagagctgaaggag
ctggcccgaaagcaaggggctgtcctcaaccagcaggcggagaaactgtattggcaggtg
aaagctgactacgagaagatggcttttgaccagcgctgtaaaaaggaagtggaggttgcc
atcaggaacaaccaaactcagctggaagatttgacacacagagcagagaagctagaggag
tacaccacctcctgcaagttgtcccttgaagagtaccttcagcgagagcaaaacctgagt
gcagagctgcagcgaggccgccagcgaagtgaggaagtgaaccaggaactaggccaggtg
ctagaggagctggggaacgcccgtctggacagtcaggaaagcagacggcagatgcaacgt
aaagagctgcttgagaggctccgcagactttaccctgacactgtgtttggccgtctttct
gacttgtgcagccccatccataaaaagtaccagctggctgtcatcaaggtttttggccgc
tacatgaatgccattgtagtggcctcagagaaagtggcccgtgactgtatcaatttcatc
aagcaagagcgagccgaacctgagaccttcctgcccattgactacttggaagcaagtcct
ctgaatgagcgactgagggaggtgcccggtgccaagatggtggtcgatgttgtacagttt
aacactgcctcaggtgccggccagctgaggaaagtggtgcagtttgtctgtggcaatgcg
ttggtgtgtgagaccatcaaagaagcaaggagtgtggcctttgacagacaggagcgccat
aaggcggtatctttggatgggacactattttcaaagtcagggatagtctctggaggctcc
agttaccttcggaccaaagcccgttgctgggatgagaaggacatgttgcagctaaaggaa
cgcaaggaccagctgacagcagagatccgcgatttgatgaagctgaggcggagggactca
gacctgaaacagatcattgctgaggctcagggtcttcaaacccgcctcaaatactccaaa
actgacctggaaaaccttcggaagaaagccatccctaaataccaagcagatatttgtcgt
atggagagtgaatttgcaaacttggactctcagatccagatgcagcagcagagtgtagag
gcaaaggatgcagagatgaggaaaatcagagaccagatcaaccagatggaggacttggtg
ttttctgacttctgtgctgagattggtgtggacaacatcagagagtacgagcaggagcac
ctaaaacagcagacagagcttgacaagaagcggctggagtttgagactcagtgcactcgg
ttaaatgcacagctggagtacaaacaagaccaattggcgcagcagaaaaagaagctccac
aaaatggaggaaatcattgacaaggaggacagagccatagctgaacagaggaaggatgag
gagaagatgctggtggcagtggaagagggccaaagcaagctgctggagctaaagaaccag
atgctgtccaagaagagccaggtggctgctgccaaagcagagctggacaagaaaacccag
agcctccaagagatcagcagagaactggtgaagcttcagcgggaggttatgtctgcagag
acagccttggagcaaaaacgcttagccagacacaacttactgttggcctgcaagatccag
ggtctgcccatcactctgctgtcagggagcctcgatgaaatcagtgaggtgcagctggac
acagaatctgaaagtacttcagccaccacgagcatctatgagagagaggcacaactagtc
atcgactactctggccttgacgcagaactcagaaatctgcaggcagacgaggaggtgaag
gcctacattgaacggctgaaggagtctgtgtcgtccattgagggagtgctgtctcgcacc
actacccccaacctgaaagctttggaaaaaataagggaggtgaaggagaggttacaggga
gtaacagatgcatttgaagcaagcaccagagcagcaagaaaatgcagtcagaagtttgag
caagtcaaagcccgtcgcttacaactcttcaaccagtgctttgaacatgtgtccgtcgta
atcgatcagatctataaaagaatatgcaggaacagcagcgcccaggccattctgagtgca
gataaccctgacgagccgtaccttggtggcataaactacaactgcgtggcaccggggaaa
cgcttcatgtccatggacaatctgtctggtggagaaaaggccatcgctgccctcgccctg
ttgtttgccatacacagcttccgccccgctcccttcttcatcttggatgaggtggatgca
gccctggacaacactaacattggcaaggtgactagtttcatcagagaggagtccagggag
aacatgcagatcattgttatctccttaaaagaggagtttttttccaaggccgacgctttg
ctgggagtctactcagattttgatgaatgcatgttcagctgcattctgtccctggacctg
cgaccttaccctctggctgaagaagacaatgggaagcaggcggacaagtag
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