Etheostoma cragini (Arkansas darter): 117949293
Help
Entry
117949293 CDS
T07493
Symbol
acanb
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ecra00535
]
117949293 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117949293 (acanb)
04091 Lectins [BR:
ecra04091
]
117949293 (acanb)
Proteoglycans [BR:
ecra00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
117949293 (acanb)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
117949293 (acanb)
Lectins [BR:
ecra04091
]
C-Type lectins
Lecticans
117949293 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
Ig_CD22
Ig_3
I-set
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
117949293
NCBI-ProteinID:
XP_034735311
LinkDB
All DBs
Position
8:complement(5232181..5246579)
Genome browser
AA seq
1326 aa
AA seq
DB search
MTPLLLLCVSLPFISATVLFELNSHDGKCDGTLRVSIPVEMPLHPLLGSKVVVPCYFQDN
TVNDTVAPTVAPLSHRIKWTYVTKEKVTTILVASEGKVQVETEYLDRVTMINYPLVPTDA
TIEITELRSKDSGTYRCEVMHGVEDNYDSVDIQVQGVLFHYRAISTRYTLTFEKAKAACI
QNSATIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIHEPRERCFGDKEDFPGVRTYGVR
DVNETYDVYCFAEKMSGRVFYSMSVEKFTFYEAGDQCAKLGARLATTGELYLAWKAGMDV
CNAGWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPYPDSRYDAVCFQAGEDDN
AVPVRTTPFPDIIHITLTPGIHPSFTPSLGGEEMKRGEVLSLLPVPPSMTDSDSAMSPTG
VVFHYRPITGRYTLNFVEAQQACQSVGAVIASSQQLQAAYEKGLHQCDAGWLLDQTVRYP
IVSPRDNCAGNLPHLPGVRSYGLRPASEHYDVFCYVERLRGEVFFTSDYDSFSFEEAVQH
CQKLNTTLATTGQLFAAWNQGLDKCRPGWLMDRSVRYPITTPRSQCGGGQVGVHMIYAYP
NQTGFPDEHSRYDAYCFKAEIPIVDVEHETSVNLTIVTVDVINKTTVTVDHFAPTVETTV
HDNGTETSVNITEIEDFINKTTITTHEVAYTVRPLLPPIPVDVSGSGSAVDVSGSGSADH
SASGEISGESGTSGTSVDASGSGQNVIFNGHTDVFSGDHSASGGHQEAEGESGVIITSGE
LGSASGSGEGFDGQHSGFSVSGSCFTSGSGDISGSSADSIIMIDGKMEEVSKTYQKNTEQ
ELGQGGIDTSGVFLESSTSGSGSMSGSGSGGFSGISFVDHSTVDMTVQPSGEQEVSGYRP
SGYGFHSGFPSGFPSGVSGSGSGSGDYMHRGDVIYLTGNDMIEVTKLPQVRHPEQGRGVV
EVSGEGSGSGNHHEFSATSDQSLHLSGHGALHEKPFGENLSITLPPGMTHTEYIASPSNS
GLVDEGQETRAEPTVYTVTPDAAYTSPITAPTLSLTTPAVLEQPEVVDASADPCDLNPCG
SGSCSVQGELAVCQCPTGFTGEDCSTPVQGCAEGWLEFKGSCYLHFAERNTWPEAEQRCQ
EDNAHLVSIGSQEEQQFVNSNGQDYQWIGLNDKDVQNEFRWTDGSPLTFENWRPNQPDNY
FNSQEDCVVMIWHEGGQWNDVPCNYHLPFTCKTGPATCGAPPEVENGRPMGSGRERYPVN
SIVRYQCDTGYTQRHLPVIRCMPDGQWEKPQVECTKAGANSNRLHKRSLRRRSKGVSSQQ
KQRKLL
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgacccccctgcttctgctttgtgtgtccttgcccttcatctcggcaacagtattattt
gagctcaacagccatgatggtaagtgtgatggcacattgcgtgtcagcatccctgtggag
atgcctctccatcctctgctggggagcaaagtagtagtaccatgttacttccaggacaac
acagtcaatgacaccgtcgccccgaccgtcgccccgctctcccaccgcatcaaatggacc
tacgtcaccaaggagaaagtcaccacgatcctggtggcgtcagagggaaaagttcaagtg
gagacagagtatttggacagagtgacgatgatcaactacccgctggtgcccactgatgca
accatcgagataacagagctgaggtccaaagattctggcacctatcgctgcgaggtgatg
cacggagttgaggacaactatgactctgtggatatccaggttcagggtgttttgtttcac
taccgagccatctccacccgctacaccctgacatttgagaaggcaaaggccgcctgcatc
caaaacagtgccaccattgccactccagcccagctgcaggctgcttacgatgacggatac
caccagtgtgatgctggatggctctcggatcagactgtcaggtaccccatccatgagccg
cgggagcgttgctttggagacaaggaggacttccccggcgtgagaacctatggcgtgaga
gatgtcaatgagacctacgacgtgtactgttttgcagagaagatgtcaggcagggtcttc
tactccatgtctgtggagaagtttaccttctatgaagcaggagatcagtgtgccaaactc
ggtgcccgacttgccaccaccggagaactatacctggcctggaaggctggcatggatgtg
tgtaatgctggctggctggcggacaggagcgtgcgctaccctatcaacatcgccaggcct
cagtgtggaggggggcttctaggagtaagaactgtctacctgttccccaatcagacagga
tacccctacccagactctcgctacgatgctgtctgcttccaagctggtgaggatgacaat
gccgttcccgtgagaaccactccttttccagatataatccacattacactcacccctggg
atacacccaagcttcaccccctcacttgggggagaggagatgaagcgtggagaagtcttg
tccctattgcccgtcccgcccagtatgacagactcagattctgccatgtctcccacaggt
gtggtgtttcactaccgacccattaccggtcggtacactctgaactttgtggaggctcag
caggcgtgccagagtgttggggctgtcatagccagcagccagcagctgcaagcagcctat
gagaaaggcctgcaccaatgtgacgctggctggctccttgaccagactgtcaggtatccc
atcgtgtcacctagagataactgtgctggtaatctgccacacctcccaggagttcgatcc
tacggcctgagaccagctagtgaacactacgatgttttttgttatgtggaacgtctgcga
ggtgaggtcttcttcactagtgactatgacagcttctcctttgaagaggctgtgcagcac
tgtcagaaactcaacaccaccttggccaccactgggcagctgtttgctgcttggaaccaa
gggcttgataagtgccgtccaggctggctgatggaccgtagtgtccgctaccccatcaca
actcccaggtcacagtgtggaggcggtcaggttggcgttcacatgatctatgcctacccc
aaccagacaggatttcctgatgagcattcacgttatgatgcttactgttttaaagctgaa
attcccattgttgatgttgaacatgaaaccagtgtgaatctgacaattgtgacggtggat
gttatcaacaaaacaacagtcacagtcgatcactttgctcctacagttgaaactactgtg
cacgacaatggaactgaaaccagtgtgaatatcactgaaatagaggattttatcaacaag
acaaccatcacaactcatgaagttgcttacactgtgagaccccttttacctccaatccct
gttgatgtgtctggctctggttccgctgtggatgtgtctggctctggttcagctgatcat
tcagccagtggggagatctcaggggagtctggcacatccgggaccagtgttgatgcatcc
ggttcaggacagaacgtcatcttcaacggacacactgacgtcttctctggagatcactct
gcctctggaggtcatcaggaggcagaaggggaaagtggtgtcatcattacatctggagaa
ctgggtagtgcatctggatctggggaggggtttgatggacaacactctggcttcagtgta
tcgggatcatgttttactagtggaagtggggacatcagtggtagcagtgctgactcaatc
attatgatagatgggaagatggaggaggtgtcaaaaacttaccaaaaaaacaccgagcag
gagttaggccagggcggcattgataccagtggggtatttttagaatcaagtacgtccgga
tctggaagtatgtccgggtcaggctctggtggattttctggcatctcatttgtcgaccac
agtaccgttgatatgacagtccagccatccggtgagcaggaggtgtctggatatcggccc
tctggatatgggttccacagcggctttcccagtggttttccatctggtgtctcaggcagc
ggctctggctctggggactatatgcatcgtggtgatgtaatttacctaacaggcaatgac
atgatagaagtgaccaaactgccacaggtacgccaccctgagcagggacggggggtggta
gaggtaagcggggaagggagtgggtcagggaaccatcatgaatttagtgccacttcggac
caaagcttgcatctctcaggacatggagcccttcatgaaaaaccatttggtgagaacctt
tctatcaccctaccgcctggaatgactcacactgagtacattgccagtcccagtaattca
ggactcgtggatgagggtcaggaaacccgtgcagaacctacagtttatacagtgactcca
gatgcagcctacaccagcccaatcacagcaccaacattgtcattgacaacccctgctgta
ctggagcaacctgaagtagtggacgcctctgcagacccctgtgatctaaacccctgtggt
tcaggatcctgctctgtgcagggagagctcgctgtgtgtcagtgtcctactggtttcact
ggtgaagactgctcgacacctgtgcaaggctgtgcagagggttggttggagttcaaggga
agctgttacctccactttgcggagagaaacacctggcctgaggcggagcaacgctgtcag
gaggacaatgcccacctggtcagcattggctcccaagaggagcagcagtttgtcaattcc
aatggccaggactaccagtggattggacttaatgacaaagatgttcagaatgagttccgc
tggacagacggcagtcctctgacctttgagaactggaggcccaaccagccagataactac
ttcaactctcaggaggattgtgtggtgatgatctggcacgagggcggacagtggaatgac
gtaccctgcaattaccatcttcccttcacctgcaagactggacctgctacgtgcggagct
cctcctgaggtggaaaacggtaggccgatgggtagcggcagagagcgctaccccgtcaac
tccatagtccgctaccagtgtgacacaggctacacacagcgccacctgcccgtcatacgc
tgtatgccagacggacagtgggagaagccacaagtggaatgtacaaaagctggtgccaac
agcaacaggctacacaaaagatccctcagaagaagaagtaaaggggtcagcagccaacag
aaacagaggaagctgctctga
DBGET
integrated database retrieval system
