Etheostoma cragini (Arkansas darter): 117949482
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Entry
117949482 CDS
T07493
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
117949482 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117949482 (rag1)
Enzymes [BR:
ecra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117949482 (rag1)
Ubiquitin system [BR:
ecra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117949482 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1
RAG1_imp_bd
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
zf-RING_10
zf-C3HC4_3
zf-RING_2
U-box
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
117949482
NCBI-ProteinID:
XP_034735676
LinkDB
All DBs
Position
8:complement(20235137..20240533)
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AA seq
1071 aa
AA seq
DB search
MAEESLETDGPRSSMPAELHHPHSEYSKWKFKLFRVKSMEKAPLPSEAQPEKGALLGISH
HAAPNIELDNAVSPGSVMKLCLGGKSKENVEGPGWRVDMKLQEMDTHMDNLRCLCRLCGM
ALRKVKGPVHDVGGDLDEISKGALRKMGCKFTSWPEVILKVFKVDVTEDIESVQPLLFCH
RCWVVAMRGGGFCSFSRTRVPDWKPHSSPCHLCSPRKPLFQRTGRKRRKAIPKAQSLAKR
TRWDHSNIIAVGERRALRPFGDHHHAPVPQACRKTSIQREQWVRNITHCQKDHVSTKLIS
EKLPVDFLFSFTCLVCDHLLSDPVQSPCGHLFCRSCILKYNHVLGPHCPACNLSCAPDEL
SPPTRAFLSALHSLPLLCPGSGCGKQVRLDSFKAHCLGHELDGQDTKQQSSQIDNSLQAN
KGGRPRQHLLSLTRRAQKHRLRDMKNQVRAFADKEEGGDLKSVCQALFLLALRSANEHRQ
ADELEALMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRAAE
KELLPGFHDFEWQPALKNVSTSCNVGIINGVSGWASSVDDFPADTITRRFRYDVALVSAL
KDLEEDIMEGLRESGMEDCACTSGFSVMIKESCDGMGDVSEKHGGGPAVPEKAVRFSITI
MSVSVMADEEEKEVTIFTEPKPNSELSCKPLCLMFVDESDHETLTAVLGPIVAERNAMKE
SRLIISMGGLPRSFRFHFRGTGYDEKMVREMEGLEASGSSYVCTLCDSTRAEASENMVLH
SVTRSHEENLDRYEIWRTNPFSESVDELRDRVKGVSAKPFMETHSTLDALHCDIGNATEF
YKIFQDEIGEVYKKVNPSREERRSWRAALDKQLRKKLKLRPVMRMNGNYARRLMTQEAVE
VVCELVPSEERREALRELIRLYLQMKPVWRSSCPAKECPDQLCRYSFNSQRFADILSTTF
KYRYDGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAFEL
EDVLKHHWLYTSKLLQKFMEAHKDSAKALQATIDPVQSQDYEDMSLEMNDF
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagagcctggagacagatggccccagatcctccatgccggctgagctccac
catccccactctgagtactctaagtggaagtttaaactgttccgggtaaagtccatggaa
aaggcccctttgcccagtgaagcacagcctgagaaaggagccttgttagggatctcacat
catgcagccccaaatatagagttagataatgctgtgagtccagggagtgttatgaaattg
tgcctcgggggaaaaagcaaggaaaatgtggagggccctggctggagggtagatatgaag
ctacaggagatggacacccacatggacaacctcaggtgcttgtgccgtctctgtggcatg
gccctgagaaaagtcaaaggaccagtgcacgatgttggcggggatctggatgagatcagc
aaaggtgccctgcgcaaaatgggctgcaagtttacaagctggccagaggtcatcctcaaa
gtcttcaaagtggacgtgacagaggacatagagtctgtccaacctcttctcttctgccat
cgttgttgggtggttgccatgcgcggaggcggcttctgcagcttctccagaacgagagtc
ccggactggaaaccccactcttccccctgccatctttgctcacccaggaaacctttgttc
cagcggactggaaggaagaggcgaaaagccattcccaaagcccagagcctggcaaaaagg
acaaggtgggaccacagcaacatcattgccgtgggtgagaggagggctctgagaccattt
ggagaccatcatcatgctcctgtgccccaggcatgtaggaaaaccagcatccagagagag
caatgggtgaggaacatcacccactgccagaaggaccatgtgagtaccaagctgatctct
gaaaagcttcccgtggacttcctcttttctttcacctgcctggtgtgtgaccacctgctc
tctgatccagtccagtccccctgtgggcacctcttctgtcgcagctgtattctaaaatat
aaccacgttctgggacctcactgcccggcctgcaacttgtcctgcgcccctgatgaactg
agcccacccaccagagccttcttatcggccctacattccctgcctctgctctgccctggg
agtggctgtggcaagcaagtaaggctagactcattcaaagctcattgtctgggccatgag
ctggatggacaggacacaaagcagcagtcatcacaaatcgacaactccctacaagccaat
aaagggggaagaccccgtcagcacctactgtcgcttacccgtcgagcccagaagcatcgg
ctgagggatatgaagaaccaggtgagggcgtttgcagacaaagaggaaggtggcgacctg
aagtctgtgtgtcaggctctgtttctgctcgcactgaggtctgcgaatgaacaccggcaa
gcagatgagctagaggcactgatgcaaggcagaggctttgggttgcatcctgctgtgtgc
ctggccattcgggtcaacacttttctgagctgcagccagtatcacaagatgtaccggact
gtcaaagccaccagtggccgccagatctttcagcccttgcacaccctgcgagctgcagag
aaggagcttctccctggctttcacgactttgaatggcagcccgctctcaagaatgtgtct
acatcttgcaatgttggcattattaatggagtctctggatgggcttcctcggtggatgac
ttcccagctgacaccatcactcggcggtttcgttatgatgtggcactggtgtccgcatta
aaggatctggaggaggacatcatggaagggctgagagagagtgggatggaagactgtgct
tgcacctcaggcttcagtgtcatgatcaaggaatcctgtgatggcatgggcgatgtcagc
gagaagcacggtggaggaccagctgttcctgagaaggctgtacgtttttctatcactatt
atgtctgtctctgtcatggcagatgaggaggagaaagaggttaccatcttcactgagcca
aaaccaaactcagaactgtcctgtaagcccctttgcctgatgtttgtggatgagtcagac
catgagacgctgacagctgtcctggggcctatagttgcagagcgtaatgcaatgaaagag
agcaggctcatcatatccatgggtggactacctcgctcctttcgctttcacttcagaggc
acgggatatgatgagaagatggtgcgtgagatggagggcctcgaggcctcaggatcttcc
tatgtgtgcactctttgtgactcaactcgggcagaggcctctgaaaacatggtgctacat
tccgtcacccgcagtcatgaagagaacctagatcggtacgaaatctggagaaccaaccct
ttttctgagtctgtggatgagctgcgagacagagtcaagggggtctctgccaagcccttc
atggagacccattccacactggacgcattgcactgtgacattggcaatgccactgagttc
tacaaaatcttccaggatgagatcggagaggtgtacaaaaaggtcaaccccagtcgggag
gaacggcgcagctggagggcagccctggataaacagctgaggaagaagttgaagctgaga
ccggtgatgaggatgaatggcaactatgcccggcggctaatgacccaagaggctgtggag
gtggtgtgtgagctggtgccctcggaggagaggagggaggccctgagggagcttataagg
ctctacctccagatgaagcctgtgtggcgctcctcctgccctgccaaggagtgccccgac
cagctgtgccgctacagctttaactcccagcgctttgctgacattctctccactacattt
aaatataggtatgatggaaagataaccaattacttgcacaagaccctggcccatgtgcct
gaaatcatagagagagatggatccataggagcttgggccagcgaagggaacgagtcggcc
aacaaactgttcaggcgtttccggaagatgaacgcacgtcagtcaaaggcctttgagcta
gaggatgtgttgaaacatcactggctctacacatccaagctcttgcagaagtttatggaa
gctcacaaggactctgccaaagctctgcaagctaccattgacccagtccagagccaggat
tatgaggacatgtctctggaaatgaatgacttttga
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