Etheostoma cragini (Arkansas darter): 117949678
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Entry
117949678 CDS
T07493
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117949678 (hps5)
Membrane trafficking [BR:
ecra04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
117949678 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_HPS5
TPR_HPS5
PEP5_VPS11_N
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_Vps41
Beta-prop_THOC3
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
117949678
NCBI-ProteinID:
XP_034736050
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All DBs
Position
8:complement(12556836..12568475)
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AA seq
1119 aa
AA seq
DB search
MPLMPVVPENHSHVLAEFDCLDPLLSALRLDSGRLKCTCLAVSRKWLALGTSAGGLHLIQ
KEGWKQRLILTHKEGSIAQVACCPHDEDFIAVATSQGLVVVWELQLERRGRPERVSASWE
HRGQGITALCWDTSALRVFVGDTGGKVSFLRAGSSKLGKGSAFVIFPVQTVTTVDSRVVQ
LGYQDGRLLVSSLSRCYLCDTEREKFWRVGNKERDGEYGACFFPQNRGLLVGQPPLLYSA
RPGSRIWEASFNGEVLSTHQFKQPLACPSLPLITYKDEPHYNPEQKSPQSIAFPKLLYFG
DQNLLTWTDSAIYVFTPQNGQVLLWTEVKDLVDIAVYRNELFCLHGSGRLSHLSLLSAER
CVERLLRRESWPLAAVVCCMFQHTITTSRARKSIPIDRLEHLRSQLSSSTHLDLTGQLEE
VITKLEPLDSASSSRRSSISSHESFNVLDCGIYRVISRRGSQSDEETSSLINQSMSEEER
LKEFNFVQEDDQVDHDPQISERLEAERSEQGLQFHLPLSFRPKPPRIALQAVKDSVSSFV
KKTTEKINTLQMNSDLWQRPEFRESGQAEISATAPYSEEMDNEVYDDMPNTEANMQELRS
ATERAISQIQDPLVLLDPVCLRETLLEWLAVLERILGPEEHGSAAAGDSNVDGPGEERWD
YLNTCSEQREESSFSSREPTESITEEKRKACPELGEKEDQCKSSEKEPEVSDGSPPNPVR
VVSPKPLPSDLLSNLTQLATLYIELSCFRNQQNEQALGCTTFLRSYFFLLDQERVRRMCL
LCYREQPGVQSSFTEAMLELTQSSKVVEVIQRGDLLRSLRSLRELQPWSAPPLLAHLHRL
YEKHGEAAVRSFTQFYPTITPADVMTMAQQSHFLAYLDNLVQSQTEEDRLSFLQSLLEPE
SLRQDWLELALTHDAPQHCDTLTSDGQPRWRSHCFSWGYGRLLSLLIRLPGDLSSKQKMA
ETCRSHGYWTGYIYLCCQLQRRTEAFSTICQLDDFSLLEDADGVKPQTLEEWKLLIQLSQ
RCTSEVVSEQVAGVNGRSWSNGSADCGGKISPENLTLMLAQTAGPDRAMAVLEECGVQLV
LSPRSKLVCELLRVTEKRQRAMIQTMLERCDRFLWSQHA
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgcctctaatgccagttgtgccagagaaccacagtcatgttctggcagagtttgactgc
cttgatccacttctgtctgctctccgtttagactccggcaggctcaagtgtacctgtctg
gcagtgtcaaggaagtggctcgcattaggaacatcagcaggagggttgcacctgatccag
aaagagggctggaaacaaagactcatccttactcacaaggagggatctattgctcaagtg
gcttgttgccctcatgatgaagactttattgctgttgcaacaagtcagggtctcgtggtg
gtgtgggagctgcagctggagcgacgggggcgtccagagagagtcagtgcgtcctgggag
cacagaggtcagggcatcactgcactctgctgggacaccagcgcactgagagttttcgtc
ggggacacaggaggcaaggtgtcctttctacgtgcaggatcctccaagctgggcaagggg
tcagcattcgttatcttccctgttcagaccgtcactactgtggactccagagtggttcag
ctcgggtaccaagatggccgcttgctagtttcttcgttgagccgctgctacctctgtgac
acagagagggagaagttctggcgtgttggaaataaggagcgggatggggagtatggagcg
tgttttttccctcagaacagggggttattagttggtcagccgccactgctgtactctgcc
cggccggggtctcgaatatgggaggccagttttaacggcgaggttctaagcacacatcaa
ttcaaacagccactggcctgtccttctctacctctcatcacttacaaagatgagccacat
tacaacccagaacagaagagcccccagtcaatcgcattccctaaactgctttattttgga
gaccaaaacttgctaacctggactgattccgctatttatgtcttcacacctcagaacgga
caagtgcttctgtggactgaagtcaaagacttggttgatattgcagtctaccgcaatgag
ctcttctgtctccatggcagcggacgtctgtcccacctctccttgttatctgctgagcgc
tgtgttgagcgtctgctacggagggagtcctggcctctggctgctgtggtctgctgtatg
ttccagcacacgatcaccaccagcagagccaggaaatcaattcccatcgaccgacttgaa
catctcaggtcccagctcagctccagcacacacctggacctgactggccagttggaggaa
gtcatcactaaactagaacctctggactccgcctccagcagccgtagaagtagcatctcc
tcacatgagagcttcaacgtcttggactgtggaatctatcgtgtgatcagccgcagagga
agtcagtctgatgaggaaacaagctccctcatcaatcagtccatgtcagaggaggagcgg
ctcaaagagttcaattttgtgcaggaggatgatcaggtggatcacgatccacagatcagt
gagcgtctggaagctgagcgatctgagcaaggcctgcagttccacctccccctctcattc
cgtcccaaacccccccgcattgcattgcaggccgtcaaagacagtgtttctagttttgtt
aagaagacaacagagaagatcaacaccctccagatgaactctgatctctggcagcggcct
gaattcagagagagcggacaggccgaaatatcggccacagctccgtactcagaggaaatg
gataatgaagtttatgatgacatgcctaacacagaggccaacatgcaggaacttcgatca
gcaacagagcgagcgatctcccagatccaagatcctttggtgctactagatccagtctgc
ctgagagaaactctgctggagtggctggcggtgctggagcgaatactcggacctgaagag
cacgggtcagctgccgcgggggattcaaacgtggatggaccaggagaggagaggtgggat
tatctaaacacctgctcagagcaacgagaggagtcttccttctcatcaagagaaccaaca
gagagcatcacagaggagaagagaaaagcgtgtcctgagctcggagaaaaagaggaccag
tgtaagtcttctgaaaaggaacctgaagtttcagatggtagccctccaaatcctgttcga
gtggtgtctcccaaacctttaccatcggatctcctgtccaatctcacccagctagcgacg
ttatacatagaacttagctgctttagaaaccagcagaatgaacaagcattggggtgtaca
actttcctgcgcagctacttctttctgctggaccaagagcgtgtgagaaggatgtgtctg
ctgtgttatcgggagcagccgggggtgcagagctccttcactgaggccatgctagagctc
actcagtccagtaaggttgtggaggttatccagagaggtgatttgctgagatcactgcgc
agtctgagagagctgcagccctggagtgcaccgcctctactcgctcacttacacaggctg
tatgagaagcacggggaggcggctgtacgctcgtttactcagttctatcctacgataact
cctgctgatgtaatgaccatggctcagcaaagccacttcctggcatacctggataatctg
gtacaatcccagactgaggaggacagattgtcatttttgcagtcccttcttgaaccagaa
tctctgagacaggattggctggagcttgcacttacccacgatgcccctcaacactgtgat
actttgacttctgatggacagcccagatggcgttctcattgtttcagctggggttatgga
cgcctcctatcgctcctgattcgtcttcctggagacctgtcttccaagcagaagatggcc
gagacttgccgcagtcacgggtattggacaggctacatttacctctgctgtcagctgcag
cgtcgcacggaagcattctccaccatctgtcagctggatgacttcagcctgctggaggac
gctgatggtgttaagcctcagaccttggaagagtggaagctcttgatccagttatcccag
cggtgcaccagcgaagtagtctcagagcaggttgcaggtgtgaatggaagaagctggtcc
aacggctcagcagattgtggtggaaagatcagcccagagaacctgaccctgatgctggct
cagacagccgggcccgaccgcgccatggccgtcctggaggaatgtggagtgcagctggtc
ctttcgccacgctccaaactagtctgtgagctgctgagagtcactgagaagaggcagaga
gcaatgatccagacgatgctcgagcgctgtgatcggttcctgtggtctcagcacgcctaa
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