Etheostoma cragini (Arkansas darter): 117949683
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Entry
117949683 CDS
T07493
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03022
Basal transcription factors
ecra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117949683 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
117949683 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ecra03021
]
117949683 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
ecra03400
]
117949683 (gtf2h1)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117949683 (gtf2h1)
DNA repair and recombination proteins [BR:
ecra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117949683 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
117949683
NCBI-ProteinID:
XP_034736056
LinkDB
All DBs
Position
8:complement(12568715..12575401)
Genome browser
AA seq
550 aa
AA seq
DB search
MSSLSEEVLLVVKKVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTTFHFSNESSALKDRDAAKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISADEFWANRLGDINNADPTISNNKQEVGISGAFLADIRPQTDG
CNGLRYNLTADIIESIFRTYPAVKEKYSENVPHNLTEKDFWTRFFQSHYFHRDRINTGTQ
DIFSECAKQDEKGLKSMVVQGVKNPLVDLLSLEDKTLDEGYGFCKTFPSTSNLNRTVKES
SNSAIIKRFNHHSAMVLAAGSRKGETPADHTSETGSTDGNSRDSDFFQPPVKKVKLQEVI
EYEDLQRENRPKTVALNLKKSDRYAHGPVPLQSQHYTTSQDIINSVNFIQHEMQNYKPNL
TQVLSSTTASSAIAALSPGGVLMQAATQQAINQMVPSEVQGELKHLYAAAGELLRHFWSC
FPVNTPFLEEKVMKMKSNLERFQMTKLCPFQEKIQRQYLSTNLTGHLEEMVQTAYRKFHI
WQTRRMLRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcactatcagaggaggtgctgctggtggtgaaaaaggttcgccagaggaagcag
gatggcacactttatctgatggctgaacgtatagcctggggtccagagggcaaagaccgc
ttcacagtcagccacttatatgcagatattcgctgtcagaagatcagcccagatggtaaa
gccaaaattcagctccagctggtgcttcacactggcgagagcaccacattccacttttcc
aatgagagcagtgcactcaaagacagagatgctgccaaggagctactgcagcagttgctg
cccaagttcaagaagaaagctaacaaggaactggaggagaaaaacaggatgcttcaagaa
gatccagtgctttttcagttgtataaggatcttgtggtgagccaggtgatcagtgcagat
gaattctgggccaaccggttaggagacataaataacgcagaccccactatatccaacaat
aaacaagaagttggtatatctggagcctttctggcagacattagacctcagacagatggc
tgcaatggcttgcgatataatctaacagctgacattattgaatccatcttcagaacatac
ccggcagtgaaggagaagtatagtgaaaatgtgcctcataacctgacagagaaggacttc
tggacccgcttcttccagtcccattattttcaccgagaccgcattaacacaggaacacag
gatatcttctcagagtgtgccaagcaggatgaaaaggggttaaagtctatggtggttcaa
ggagtgaagaatcctttggtcgacctcctgtcattagaggataaaacattagacgagggt
tatggattttgcaaaacatttccatcaacttccaatttgaacaggacggtgaaagagagc
agcaactctgccattataaagcggttcaaccatcacagtgccatggtgctggcagcaggc
tcacgcaagggggaaactccagctgaccacactagtgaaactggcagtacagatggaaat
tcaagggattctgacttcttccagcctcctgtaaagaaggttaaattacaagaagtcata
gaatatgaagatctgcaaagggaaaacagaccaaaaacagtcgcattaaacctcaagaag
tctgacaggtatgctcatggtcctgttccacttcagtcccaacactatacgacaagtcag
gatatcatcaactctgtcaacttcatccagcatgagatgcaaaattacaaacccaacctc
actcaggtcttgtccagcacaacagccagttctgccattgcagcactttctccaggtggc
gtcctcatgcaggcagcaacacagcaagccataaatcaaatggtacctagtgaggttcaa
ggagagttgaagcatctttatgcagctgctggagagttgttgagacacttctggtcctgt
tttcctgtaaacacaccatttttagaggaaaaggtaatgaaaatgaagtcaaacctcgag
agatttcagatgaccaagctttgtccttttcaggagaagattcagcgtcagtacttaagt
acaaacctcacagggcatttggaggaaatggtgcagacagcctatcgcaagttccacatc
tggcaaacccgccgcatgttgaggaaaacctga
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