Etheostoma cragini (Arkansas darter): 117949833
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Entry
117949833 CDS
T07493
Symbol
fn1b
Name
(RefSeq) fibronectin 1b isoform X1
KO
K05717
fibronectin 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04510
Focal adhesion
ecra04512
ECM-receptor interaction
ecra04810
Regulation of actin cytoskeleton
ecra04820
Cytoskeleton in muscle cells
ecra05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117949833 (fn1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117949833 (fn1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117949833 (fn1b)
04810 Regulation of actin cytoskeleton
117949833 (fn1b)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117949833 (fn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecra04131
]
117949833 (fn1b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117949833 (fn1b)
00536 Glycosaminoglycan binding proteins [BR:
ecra00536
]
117949833 (fn1b)
04990 Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
117949833 (fn1b)
Membrane trafficking [BR:
ecra04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
117949833 (fn1b)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
117949833 (fn1b)
Glycosaminoglycan binding proteins [BR:
ecra00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117949833 (fn1b)
Domain-containing proteins not elsewhere classified [BR:
ecra04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
117949833 (fn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
fn1
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
fn2
NDNF
Fn3_Dep-1_2nd
Interfer-bind
FN3_Tor_3rd
DUF4945
IL3Ra_N
Motif
Other DBs
NCBI-GeneID:
117949833
NCBI-ProteinID:
XP_034736258
LinkDB
All DBs
Position
1:complement(13253760..13276423)
Genome browser
AA seq
2464 aa
AA seq
DB search
MSSGPLTGLLLALCVSSAVHGLPKKSRRQSGQYQVYPVLHDAVAVTPVGCEDNGRSFRQN
EQWEKPYLGGSTLVCTCNGAAGIKCKSKPEVEESCYDKLNDRSYRVGETYERPKDGMMWD
CTCVGSGRGKISCTIANRCHEGGMSYKIGDTWQRPHDTADYMLECVCLGNGKGEWTCKPV
AERCYDNNAASSYVVGETWERPYQGWMMLDCTCLGEGNGRITCTSRNRCNDQDLRKSYQI
GNTWTKTDTSGHIVQCQCLGNGRGEWKCERHNAGRTTGAVVLTPTQFQIRQEVEPLIEGT
CRTDSGATYYDGQRWFRSQGSTQMLCTCLGNGVSCQEWEARKQTYGGNSDGQPCAFPFVF
MGKTYYSCTSDGRPDGQLWCSTSADYEKDKQYSFCTEKNAIVATRGGNSNGGLCHFPFLY
SGRNYTDCTSDGRRDGMRWCGTTHNYDTEQRFGFCPMAAHEELCTTNEGVMHRVGDKWDK
RHDVLGHMMECTCLGNGRGEWSCVAHSQLRDQCIVDDLSYEVNQEFTKRHDEGYMMNCTC
FGQGRGRWKCDAIDQCQEPQTRVFHQIGETWEKVIHGIRYHCYCYGNGIGELRCEPQQTN
QDGHRPVQVIITEAGKQPDSHPIQWDPPSSVQITQYILKWRIKNTRAPWREVTVPGHLNS
YTISGLRPGITYEGQLISILRYGRREVTRFDFTTTEGSLETSEGETTQLAPEVDTSESVT
EITSNSFVVSWTSASATISGFRVEYELSEEGAKSKVLDVPRTANSVTIADLLPGRRYNVN
VYELPDQGQPNLILTTSQTTAPDAPTQHEVDEVGESSIRISWSRPQAPITGYRVVYTPSL
EGSSTELNLPDSETSVTLADLRPGLLYNISIYAVEEDQESEPVFVQVNTAGSPHPEEVRP
PTDLQFYKVSDIKITITWTGPPSEVTGYRVQFTPIGPGGTETRLLQLPTSPNAYADVTHL
QPGTLYRFYIYAVNGGVESKPLVGEKSTKPDSPSDVRFTEIGPDSALVIWEAPRAIVSGY
RLFLSIEGSSPIEKRIPGRVTQYPLRNLRPDTQYTATIHSELDGDLSEGVTTYFTTSPQM
GNAPVFSTEVTDTSIIISWIPVRRFSYKLSVLPSQVGESPREETSDSGRIAIPGLIPGTQ
YTYSVQPMFGGRNRGNPITRNVVTSLSPPTDLRVESNTVTGDLTVYWVASKTPGITGYRV
TSTPTNSQRGNTLEELVGPDQTSCLLESLNPGAEYNISVFTNKGHLESVPVSTIVTPEIP
TPSHIDFVDITDTTLGLRWIPRNYLTITGYRIMVVTSGENLPIFQDMVEASAGYYTIRGL
EPGVDYDISIFTVTEDGESKPTTHTKQTQAAIPAPTNLQFKGVGPDHIRVTWTVPHVATQ
SDISRFVIRYHPVATDDDIKEVNVGGATNTFVLENLLPNTEYRISVVCVYGERVSEPATG
TQRTTLDSPTGLDFSDIRTNSFTVHWLAPTAAITGYRLRFQKTSGGRPKDERLPPTRDRF
TLTGLTPETEYLIYVYAVNNNQESQPLTGTQATISDAPTDLEVTSSTPSSITIRWDAPSV
TVKNYRITYGGTSGEAPQEFTIPGTQTTATITGLKPGTDYTITVYAVTGRGDSPSSNTPV
YITHKTDTESPTNMKLTDVSDNAITVRWSPPQGPIKGYRITSVPKNGLGPSYSEVVAPDQ
TQMTFTGLMPTVEYVVSVYALGNDGQPSSPLVENAITAMDRPKDLTFSEIDSTSMRITWD
SPDGTVTSYRVLYSSAEESEMELRPAPRGDQDTAVLRGLRPGTEYTVKVIALHGRTPSTP
LVGTQATVIPAPTNLVISEVGPSTFTVSWQAPNARLSGYRVVVNPKNINGPNKEMNLAPD
TTRVVVPGLMVATTYQIYVYALKNSVTSRPVEGETTTLEDVSPPRRVRISDVKDSSITLT
WRSKGETITGFLINAKPFSGSYPTISRNIPGEANTYTLTGLQPGTRYSIDLYTLNGNTKS
APFNLILYTAEPVVKAPTNLQFTSLTPTSVSFTWQPPATHITGYYVTYEESGGAPRQLTP
QPHSGQNYATISGLRPATEYIIKIIAYQNTQRSTPLVGKIRTQSESLLPLPLPNRPGGVD
DRLDVPEPDFDNKVQVVGNNGPDGSSGQSQTVEYTEYNNNNGDNRYNGNSGNPQSAYGQV
REPLVFVPLPDAEGRRLPILKLNVPIGSTFGNETGVPQEAQTQTTISWKPYKQSNAYLVS
CHPLTHLEEKMFQFRLPGTATTATLIGLSPGANYNVMVEALMGALKHKILEQVVTAGNTI
PEGVPSTKDSCYDAFTATYHDVGAEWERMSETGFKLWCRCLGLGSGHFRCDSSKWCHDNG
NNYRIGEKWDRREENGHLMSCTCLGNGKGEFKCEPHDSVCYDDGKTYQVGNQWQKEYLGA
ICTCSCFGGQQGWRCENCRRPAGEVDASLLQPVRYGNIRNIHCPIECLRPDLLADAHAPQ
NPRE
NT seq
7395 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtggcccactaacagggttactgcttgcgctgtgcgtaagcagcgcagtccac
ggtttgccaaagaagagcagaagacaaagtggccagtatcaggtgtatcctgtcctccat
gacgcagtggccgttactccagttgggtgtgaggacaacggtcgctccttcagacagaac
gagcagtgggagaaaccctaccttggtggtagtacactggtgtgcacctgcaatggagca
gcaggcatcaaatgtaaaagcaaacctgaagtggaggagtcctgttatgataagctcaat
gaccggtcataccgtgttggtgaaacctacgagagaccaaaggacgggatgatgtgggac
tgcacatgtgtcggttctggtcgaggcaagatcagctgtaccattgcaaatcgttgccat
gaaggtgggatgtcttataaaatcggggacacttggcagaggcctcatgacaccgctgac
tacatgctagagtgtgtgtgtcttggaaatggcaaaggagaatggacctgcaaacctgtg
gctgaacgttgctacgacaacaacgctgcatcatcgtacgtcgtgggggagacttgggag
agaccgtaccaaggctggatgatgctggactgcacctgtctgggagagggaaacggacgc
atcacatgcacctcaagaaaccgttgcaacgaccaagacctcaggaagtcctaccaaatc
ggaaacacatggacaaagacagacacaagtggacacatcgtgcagtgtcagtgcttagga
aacggacgcggggaatggaagtgcgagagacacaacgcaggccgaaccacaggtgctgtc
gtgttgacccccacacaattccagattcggcaggaggtcgaaccccttattgaagggacg
tgccgcacggactcgggagccacctactacgacgggcagcgttggttcagaagccagggc
agcacgcagatgctctgtacctgtctgggcaacggagtcagctgtcaggagtgggaggcc
aggaagcagacgtatggtggcaactcagacggtcagccatgtgcattcccgttcgtcttc
atgggaaagacctactactcctgtacctcagacgggcgcccagatggccagctctggtgc
tctacatccgcagactatgagaaagacaagcagtactctttctgtactgagaagaacgca
attgtggcaacacgaggtggaaactccaacggcggcctgtgccacttcccattcctctac
agtggccgcaactacaccgactgcacctctgacggtcgtcgtgatggcatgaggtggtgt
ggcaccacccacaactacgacacagagcagcgctttggattttgccccatggctgcccat
gaggagttgtgtaccaccaatgaaggagtgatgcaccgtgtaggcgacaagtgggacaaa
cgccatgatgtccttggtcacatgatggagtgcacatgtctgggcaacggtcgtggggag
tggagctgtgttgctcactcacagctgcgagatcagtgtattgttgatgatttgtcctat
gaagtaaaccaggaatttaccaagcgccacgatgagggctacatgatgaactgcacatgc
tttggacagggacgtgggcgctggaagtgtgacgctattgatcagtgtcaggagccacaa
accagggtgttccaccagattggagaaacatgggagaaagtcatccatggcatccgctac
cactgttattgctatggcaacggcattggagagttgagatgtgaacctcagcagaccaac
caagatggccacagacctgtccaggtgatcatcacagaggcaggaaaacagccagactcc
caccccattcagtgggaccctccttcatctgttcaaattacccagtacatcctcaaatgg
agaattaaaaatacccgtgcgccctggagggaagtcactgtccccggccacctcaactcc
tacaccatcagtgggctgcgtccaggcatcacctacgagggccagctgatcagcatcctg
cgctacggacgtcgcgaggtcacacgcttcgatttcaccactaccgaaggctccttggaa
acatcagagggagagacaacccaacttgctcccgaggtggacacttctgagtctgtgaca
gaaatcacctcaaacagctttgttgtgtcctggacatcagcctctgctactatctctggc
ttcagggtggagtatgagctcagcgaagaaggggccaagtcaaaagtcttggatgttcct
cgcacagccaactctgtcacaatcgcggacctcttgccagggcgcagatacaatgtcaac
gtctacgagctcccagatcagggacagccaaacctcattctgaccacgtcccagactaca
gctcctgacgcccctactcagcatgaagtcgatgaggtgggtgagtcctccattcgaatc
agctggtccaggccacaggctcctattactggttaccgcgtggtgtacacgccatcattg
gaaggcagcagcactgagctgaacctgccagattcagagacctcagtgaccctggctgac
ctgcgccccgggctcctttacaacatcagcatctacgctgtggaggaggaccaggagagt
gagcctgtgtttgtacaggtcaacaccgccggatcccctcatccagaggaggtacggcca
cccacagacctgcagttctacaaggtttcagatatcaagatcaccatcacctggaccggt
ccacccagcgaggtaaccggttacagggtgcaattcacccccattggtcctggcggcact
gagacgaggctcctacagctgcccacctcacccaacgcctatgctgacgttacccacttg
cagccgggcacactgtaccgcttctacatctatgccgtaaatgggggagtggaaagcaag
ccgcttgtgggagaaaagtctaccaaacctgattcgcccagcgatgtgcgtttcactgaa
atcggcccagacagtgcattggtcatctgggaggctccccgcgccatcgtcagtggctac
cgtctctttctgagcattgaaggctccagccccatcgagaagaggatccctggcagggtc
acccagtaccctttgaggaatttacgtccagacacccagtacactgccaccatacactct
gagctggacggtgatctcagcgagggcgtcactacatatttcaccaccagtccccagatg
ggaaatgctcctgttttcagcaccgaggtcactgatacctcaatcatcatcagctggata
cctgtccgcaggttcagctacaagctgtctgtgctccccagccaggtaggcgagtctccc
agagaagagacctctgactctggacgtattgctattcccggtctgattcctggaactcag
tacacctacagcgttcagcccatgtttggtggacgcaaccgtggaaacccgatcacccgc
aatgttgtcacttccctgtctcctcccactgacctccgagtagagtccaacactgtcaca
ggagatctcactgtctactgggtagcttccaaaacaccaggcatcacaggctacagagtg
acaagcacgccaaccaacagccagcggggaaacaccctggaagagttagtcggacctgat
caaacctcatgcttgctagagagcctgaatccgggagcagagtacaacatcagtgttttc
actaacaagggtcatttggaaagtgtgcctgtgtccacaattgtcacaccagaaatcccc
acaccaagtcacattgactttgtcgacattactgacaccaccctcggcctgcgctggatc
cctcggaactatttaaccattactggttaccggataatggtagtaacgtcaggcgagaac
ttgccaatttttcaagatatggtggaggcatctgctggttattacacgattcgtggtctg
gagccgggtgtggactatgacatcagtatcttcactgttacagaggatggggaaagcaaa
ccaaccacacacacaaagcaaacacaagctgccattccagctcccaccaacctgcagttt
aaaggggtgggtcctgaccacataagggtgacatggacagtccctcatgttgccacacaa
agcgacatctctcggtttgtcatccgttaccaccctgtagccacagacgacgacatcaag
gaggttaatgttggaggagccaccaacacctttgtgctggagaatctgctgcccaacact
gagtaccgtatcagtgttgtgtgcgtgtacggtgaacgagtaagtgaaccagccacaggg
actcagaggacaacccttgactcccccactggcttggacttctccgatattcgcaccaac
tccttcaccgttcattggctggctccgactgctgccataaccggctaccgcctccgcttt
cagaagacgagcggcgggcggccaaaagacgagaggcttcccccaacaagagaccgcttc
actttgactggactgacaccagagacagagtatctgatatatgtgtatgctgtcaacaac
aatcaggagagtcagcctctgactggcacacaggccaccatttccgatgctcccactgac
ctggaggtaacatcgtctaccccgtccagcatcaccattcgctgggacgccccttctgtc
acggtgaagaactaccggatcacctacggaggcacaagcggtgaagctcctcaagagttc
acaatcccaggcacacagaccaccgccaccatcaccggtctgaagcctgggactgactac
accatcacggtctatgcggttactggaagaggggacagcccttcctccaacaccccggtc
tacatcacgcacaagactgatactgagtcccccaccaacatgaaactgacggatgtcagt
gacaatgccatcactgtgcgctggtctccccctcagggaccaatcaaaggctacagaatc
accagtgtccctaagaatggcctgggaccctcctactctgaagtggtggcccctgatcag
actcagatgacgttcacaggtctgatgcccactgtggagtatgttgtaagtgtctatgct
ctgggcaatgatggacaaccctcttcccccttggtggagaatgctatcactgctatggac
cgtcccaaagacctgaccttctctgaaatcgactccacctctatgcgcattacttgggac
agtccagacggcacagtaacatcataccgcgtcctgtactccagcgcggaggagagcgag
atggagctgcgtcctgcacccagaggtgaccaggacactgcggtgcttagaggccttcgc
cccgggacagagtacaccgttaaagtcatcgcactccatggccgcacacccagcacgccg
ctggtgggaacgcaggcaacagtgatccctgctccgaccaatctggtgatctcagaggtc
ggtccttccacctttactgtgtcgtggcaagcccccaatgcacgcctgtcaggctaccgt
gtggtcgtcaaccccaagaacatcaacggccccaacaaagagatgaacctcgctccagac
accacacgggtcgtcgtaccagggctcatggtggcaaccacctatcagatatatgtctac
gctctgaagaactctgtcaccagcagaccggtggagggcgagacgaccactctggaagat
gtaagtcctcctcgacgtgtgcggatctctgatgtgaaggattcttctatcacactgact
tggcgctcaaagggggaaaccatcactggttttctcatcaatgccaagcccttcagtggc
tcttaccccaccatcagtagaaacatcccaggagaagcaaacacctacactctgacaggc
ctgcagcccggcaccaggtactctattgacctgtatactctgaatggcaacacaaagagc
gccccatttaatctcatcctatatacagctgaaccagtggtcaaggctcccaccaacctc
cagttcacatctttgacccctacctccgtctccttcacgtggcagccacctgccacacac
atcacaggatactacgtcacctacgaggaatcaggaggagcaccacgacagctcacccca
caaccccactctggccaaaactacgccaccatatctggactgagaccagccacagagtac
atcattaagatcatcgcttaccagaacacacagaggagcacacctctggtgggcaaaatc
aggactcaatcagagtccttgcttcctctgcctctgcccaaccgccctggtggtgttgat
gatagactggatgtgcctgagcctgactttgacaataaagtccaggtagttggcaacaat
ggccccgatgggagtagtggccaaagccagactgtggagtacacagagtacaacaacaac
aacggagacaacagatataatgggaacagtggcaacccacagtctgcctatgggcaagtt
cgtgagcccctagtctttgtgccccttcctgatgcagagggtcgcagactgcccatcctg
aagctgaacgtgcccatcggctcaacatttggtaacgagactggggtgccgcaggaggcc
caaactcagaccactatctcctggaaaccctacaaacagagcaacgcctacctggtgtcc
tgccatccccttacacacttagaggagaagatgttccagttccgcctgccaggcacagca
accactgctacacttattggactctcccccggagcaaactataatgtgatggtagaggct
ctgatgggggcgctcaaacacaagatactggagcaggtcgtcactgctggaaacacaatc
ccagagggagtgccctccaccaaggactcatgttatgatgccttcactgcaacctaccat
gatgttggtgctgaatgggagcggatgtctgagacaggattcaagctgtggtgcaggtgc
ctgggtctcgggagtggccacttcagatgtgattcatctaagtggtgccatgacaatggc
aacaactatcgcattggagagaagtgggaccgccgtgaagaaaatggtcacttgatgagc
tgcacttgcttgggaaatggcaaaggagagttcaagtgtgaaccacatgattcagtgtgc
tacgatgatggcaaaacttaccaggtggggaaccagtggcagaaggagtacctgggtgcc
atctgcacctgctcatgctttggaggacagcagggctggcgatgcgagaactgccgcaga
ccagctggagaggtcgatgctagtcttctgcagcctgttagatatggaaacatacgcaat
atccattgccccattgagtgcctccgacccgacctgctggcggacgcacacgctcctcag
aatcctcgggagtaa
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integrated database retrieval system
