Etheostoma cragini (Arkansas darter): 117949888
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Entry
117949888 CDS
T07493
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03018
RNA degradation
ecra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117949888 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
117949888 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecra03019
]
117949888 (smx5)
03041 Spliceosome [BR:
ecra03041
]
117949888 (smx5)
Messenger RNA biogenesis [BR:
ecra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117949888 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
117949888 (smx5)
Spliceosome [BR:
ecra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117949888 (smx5)
Complex C
U2 snRNP components
117949888 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
117949888
NCBI-ProteinID:
XP_034736356
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All DBs
Position
9:22743098..22745501
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgtttttcaagtcgctggtggggaaggatgtggtggtggagctcaaa
aacgacttgagcatctgcggaacacttcactctgttgaccagtacctgaacattaagctc
acagacatcagtgtcactgacccagagaaatatccacacatgctgtctgtgaagaactgt
tttatccgtggctctgtggtccggtacgttcagctgcctgcagatgaagtagacactcag
ctcctgcaagacgctgcacggaaagaagccatgcagcagaagcagtga
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