Etheostoma cragini (Arkansas darter): 117949960
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Entry
117949960 CDS
T07493
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra04350
TGF-beta signaling pathway
ecra04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117949960 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117949960 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ecra04515
]
117949960 (neo1a)
Cell adhesion molecules [BR:
ecra04515
]
Immunoglobulin superfamily
DCC/UNC5 family
117949960 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Neogenin_C
I-set
Ig_3
ig
Ig_2
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Interfer-bind
fn3_2
NDNF
fn3_SORL1
Ig_RIMBP2
Fn3_Dep-1_3rd
Sp38
EphA2_TM
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
117949960
NCBI-ProteinID:
XP_034736467
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All DBs
Position
1:complement(10107484..10270932)
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AA seq
1317 aa
AA seq
DB search
MAERGALSLLSLLCLTFLYTETAAAKHVDKGSAAQPFSPFWFTAEPQDALAIRGNSALLN
CSAHSDAATPARIEWKKDGTFMVTDERRNILPDGSLFFTHVVHSKHNKPDEGTYQCVATI
DNLGSISSQTARLSVAGMPRFASQPSPTTVHLGNNQVIACEVNSDLVPFTRWEKDRLPLE
LSTRLVQLPSGALAISNASEADAGLYRCLVENVGSSKYSDEAQLQILPETGEESKLEFLV
QPVPVSKAVGASVLLPCLVTGYPVPHVRWMVGDKLLEESEGRVDVLGGGSVQISNLTEED
AGIYTCMAENTNGTIEAPAQLTIQVPPQFVKRPDNIYAYESMDIVFECEVSGSPAPTVKW
VKNGDAVIPSDYFKIIKEHNLQVLGLVKSDEGFYQCLAENDAGNIQSSAQLIILDHDVAL
PSFPPPSLTPNTTDHVTPGSRGVASPAGPAPSAPRDVVASLVSTRFIKLTWRSPAEPHGD
DITYSVFYSQEGTSRERVVNTSRPGEMQVTIQNLMPDTKYRFRVVAHNSNGQGESSAALK
VATQAEVQVPGPAPNLQAVSNTPTSVSLSWDKPLTGNGDMLTYKLYYTDKSFGNEQDVDV
DSQSHTMTGLKKNTEYSFRVVANNKHGPGVSTDDVVVRTLSDVPSAPPQNLTLEVQNSKG
IMLRWQPPPLNGQNGEITGYKIRYRKGSRRSEAAETTGGTQLYKLIDGLERGTEYSFRVS
AMTVNGTGPATEWTTAETFESDLDESRVPDQPSSLHVRPLVNSIVVSWTPPENQDIVVRG
YTISYGIGSPHAKTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPVYESAITRPQ
SDPIDSDVDLYELYHAPYTPVPDPSPMMPPVGVQASVLSHDTIKVTWADNSLPKNQKITD
NRFYTVRWKTNIPANTKVKMANTTSLNHMVTGLKPNTLYEFSVMVTKGRRSSTWSMTAQG
TTFETIPSSSPKDVTVVSKENKPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDWVI
EPVVGNRLTHQIQDLTLDTTYYFKIQARNSKGMGPMSEAVHFRTPKTESSDKMANDQASN
VPAKPGPPVHPNEPGPVGVGGNSEGHILVIVIIISVGAFTIIVVVVGAFLCTRRTTSHQK
KKRAASKSSNGSHKYKGNSKDLKPPDLWIHHERLELKPMDKSPDPNPVMTETPIPRTSQD
ITPADSSLDNNPHLQQRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDAQPPQPVISAHP
IHSLDNHHHHYHMGSLASPTRSYLYHQGSGHTRPHACATPISYLDRVDSTGETVLSH
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcggggagctctgtcgctcctctctctcctctgtctcacctttctctacacg
gagaccgccgcggcaaagcatgtcgacaaaggttcagcagcgcagcccttcagccccttc
tggttcaccgcggagccccaggacgctctggccattcggggcaactctgcactgctcaac
tgctcggcccacagcgacgcagctacgccggcccgcatagagtggaagaaagatggcacc
ttcatggttacagatgagagacggaacatacttcccgatggctcgctgttcttcacccac
gtggtccactctaagcacaataagcctgacgagggtacctatcagtgcgttgccactatc
gacaaccttggatccatttccagccagacggcccgtctctcagtagcaggaatgcccagg
ttcgccagccagccatcgccgaccaccgtgcatctagggaacaaccaagtgatcgcatgc
gaagtcaactccgatctggtgcccttcaccaggtgggagaaagaccgcctgccgctggag
cttagcaccagactggtccagctgcccagcggagccctggcgatcagcaacgcctcggag
gcagacgccggcctttaccgctgtctggtggaaaatgtggggtcgtccaagtacagcgac
gaggcccagctccaaatactgccagaaactggagaagagagtaagctggagttcttggtg
cagcctgtgcctgtgagcaaggcggtgggtgcaagcgtgctgctgccctgcctggtcact
ggttaccctgtgccacacgttcgttggatggttggagacaagctgctggaagaaagtgag
ggacgcgtggacgtgcttggaggagggagtgtccagatatctaatctcacagaggaggat
gccggcatctacacctgcatggcggaaaataccaatggaaccattgaagccccggcccaa
ctcaccatacaagttcctccccagtttgtgaagcggccagacaacatttacgcctacgag
tccatggacatcgtctttgagtgtgaggtttctggctcaccggctcccaccgtcaaatgg
gtcaagaacggagatgctgtcatccccagtgactacttcaaaataattaaggagcacaac
ctgcaggttctgggcctggtcaagtcagatgagggtttctatcagtgcctggcagaaaat
gatgcaggcaacatccagtccagcgcccaactcatcatcttagatcacgatgtagccctg
ccctctttccctcccccctcactgactcctaacactactgaccatgtaacgccaggctct
agaggtgtagccagtccagcagggcccgccccctctgccccacgggacgtggtagcttcg
ttggtttccacccgcttcatcaagttgacctggcgctcgccagccgaaccccatggagac
gacataacctactccgttttctacagccaggagggcactagcagggagcgagtagtgaat
accagccgtccaggggagatgcaggtcaccatccagaacctcatgccagacaccaaatat
cgcttcagggttgtggcccacaacagcaacggccagggagaaagctctgcggcgctcaaa
gtggccacccaggctgaagtccaagtgcccggacccgctcctaacctgcaggcggtgtca
aacacaccgacctctgtctctctcagctgggacaaacccctcacaggcaatggagacatg
ctcacctacaagttgtactacaccgacaaaagctttggcaacgaacaggacgttgacgta
gatagtcagtcccacaccatgactgggctgaagaagaacaccgagtacagtttccgtgtg
gtggccaataacaagcacggcccaggcgtctccaccgacgacgtcgtcgttcgcacgttg
tctgacgtaccaagtgctcctcctcaaaacctcactctggaggttcagaactcaaagggc
atcatgcttcggtggcagcccccgccccttaacggccagaatggggagatcaccggctac
aagatccgataccggaaaggatcccggaggagtgaagcagccgagaccaccggaggcacc
cagctttacaagctcatcgacggtcttgagcgtgggacagagtactccttccgggtgtcg
gccatgacggtgaacggcacgggacctgccacagagtggaccacagcagagacgtttgag
agcgacctggatgaatcccgcgtgccagaccagcccagctctctccatgtccggccgctg
gtcaacagcatcgtggtgagctggacgccgccggagaaccaggacattgtggtgcgcggt
tacaccatcagctatggcatcggcagtccccatgctaaaaccatcaaggtggactacaag
cagcgctactacactatagagaacctcgaccccagctcccactatgtgattacactgaag
gccttcaataatgtgggtgaggggattcctgtgtatgagagcgccataaccagaccacag
tcagaccccatagactccgatgttgacctgtacgaactctaccatgctccatacacccca
gtaccagacccctctcccatgatgccacccgtgggtgttcaggcctccgtgctgagccac
gacaccatcaaggtgacctgggctgacaactcgctgcccaagaaccaaaagatcacagat
aaccgcttctacacggtgcgctggaagaccaacatccctgccaacactaaagtaaagatg
gctaacaccaccagcctgaaccacatggtgacgggtctgaagcccaacacgctgtacgag
ttctccgtcatggtcaccaaagggcgccgttccagcacgtggagcatgactgcacagggc
accacctttgagaccattcccagctcctccccgaaagacgtgaccgtggtgagcaaagag
aacaaacctcgcaccataatcgtcaactggcagcctccctctgaggccaatggaaagatc
actggctatatcatctactacagtacagatgtgaacgctgaggtccatgactgggttatt
gaaccagtggtgggcaaccgcctgacccaccagatccaggatctgacgctggacaccacc
tactacttcaagatccaggcccgtaactcaaagggcatgggccccatgtctgaggccgtc
catttccgcaccccaaagactgagtcctctgacaaaatggctaatgaccaagcctcaaat
gttccagcgaagccggggcctccagtacacccaaacgaacctgggcccgttggggttgga
ggcaacagtgaaggtcacatcctggtcattgtcatcatcatctcagtgggagccttcacc
atcatcgtggtggtggtgggggccttcctgtgcacacggcgaaccacgtcccaccagaaa
aaaaagcgggctgcctcaaagtcctcaaatggctctcacaaatacaaggggaactccaaa
gacctgaagccacctgatctttggattcaccatgagagactggaacttaaacccatggat
aagtcaccagatcccaacccggtcatgacagaaacgcccatcccccgcacctcgcaggac
atcacgccggctgatagcagcctggataacaacccccacctgcagcagcggcgcaactcc
tatcgtggccatgaatcagaggacagcatgtctacactagcaggccgacgagggatgagg
cctaaaatgatgatgccttttgatgcacagccgcctcagcctgtgattagtgctcacccc
atccattcccttgataaccatcaccaccattatcacatggggagcctggcgtcgccaaca
cgcagctacctctaccaccagggcagcgggcacacgcgcccgcacgcctgtgccaccccc
atctcctatctagacagggtggactccacaggtgagacagtgctgtcacattaa
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